Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3439 ATGAATATGAATTTTGAAGCAATGAATAGAAGCTGTTCAACAACAACATCTTCATCAGACTCATGTTCATCAGAATCAAATCCAACGAACCAAAACAAACTAGACAGAATCAAAGGTCCATGGAGTGCAGAAGAAGATAGAATCCTAACTCGACTCGTTGAACAACACGGAGCAAGAAACTGGTCACTCATCAGCCGTTACATAAAAGGAAGGTCCGGAAAATCCTGTAGACTCCGGTGGTGTAATCAGCTCAGTCCAACGGTGGAGCACCGTCCATTTTCGCCGCAAGAAGATGAAACAATTATAGCGGCGCATACTCAATACGGTAACCGCTGGGCTACCATTGCGCGTCTTTTACCTGGAAGAACTGATAATGCTGTCAAGAATCATTGGAATTCGACTCTTAAACGAAGAGCGAGTTGTGGCGGTGCTCGCGGTGGTGGTGATGATTCTGTTACGGTTGCCGGAACTGTTAGCGGTGGAAATGAAAGGGGAAGTTGTTCTGCTTTGGCTTTTGAAGATGATCCGTTGACCGCGTTGACTCTTGCTCCTCCGGGGAATGTTAATGGTTATTGTGTGGAAGATCGGGAAGAGGCGGTTGCTGATCGTCGGTTTCCTTCGCCGTCGCCGGAAAGTTTTCCGACGGGGTTTTGGGATGTGATGAAAGGTGTGATTGCAAAAGAAGTTAGAGAATATGTTTCTTCTAATTTTGCTCATAATAATAATAATAATTCTGGTTTTCATTAA 747 0.4431 MNMNFEAMNRSCSTTTSSSDSCSSESNPTNQNKLDRIKGPWSAEEDRILTRLVEQHGARNWSLISRYIKGRSGKSCRLRWCNQLSPTVEHRPFSPQEDETIIAAHTQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRASCGGARGGGDDSVTVAGTVSGGNERGSCSALAFEDDPLTALTLAPPGNVNGYCVEDREEAVADRRFPSPSPESFPTGFWDVMKGVIAKEVREYVSSNFAHNNNNNSGFH* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3439 248 SUPERFAMILY Homeodomain-like 35 131 IPR009057 -
Tpr3g3439 248 Pfam Myb-like DNA-binding domain 41 99 - -
Tpr3g3439 248 SMART sant 37 86 IPR001005 -
Tpr3g3439 248 SMART sant 89 137 IPR001005 -
Tpr3g3439 248 PANTHER MYB PROTEIN-RELATED 3 230 - -
Tpr3g3439 248 CDD SANT 92 135 IPR001005 -
Tpr3g3439 248 MobiDBLite consensus disorder prediction 1 38 - -
Tpr3g3439 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 139 IPR017930 -
Tpr3g3439 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 88 IPR017930 -
Tpr3g3439 248 PANTHER MYB TRANSCRIPTION FACTOR 3 230 - -
Tpr3g3439 248 MobiDBLite consensus disorder prediction 1 36 - -
Tpr3g3439 248 Gene3D - 92 138 - -
Tpr3g3439 248 Gene3D - 37 89 - -
Tpr3g3439 248 ProSiteProfiles Myb-like domain profile. 33 84 IPR001005 -
Tpr3g3439 248 CDD SANT 40 82 IPR001005 -
Tpr3g3439 248 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3439 Tpr-Chr3 37937059 37937970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3439 26 143 MYB Transcription Factor Family AT4G37260 73.729 5.79e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr3g3439 Myb_DNA-bind_6 3.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3439 - - gmx:778051 290.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3439 3 37937059 37937970 Tpr3g3439 3 37937059 37937970 ECH