Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tpr3g3424 | ATGGCTATTCGTGTTACTTTCTCGTTTTCCGGTTATGTCGCCCAAAACCTTGTTTCCTCCGCCGGCGTTCGAGTCGGGAATTCTCGTTGTGTCCAAGAGTGTTTCATCCTTTCTCGCCTCTTTGGATCCAATCAGAAAACTAAACCCGATCTCGATCGTTCCGGCGGCGTTGGTAATTCTTACTCTGATTTTAGAAGACCTAAAAGTTGTACCTATTCTACCCTCGCCGGAGAGCTTCTCACCGAAGGTTGTAATAATCCGATCATTTTAGGATTAATTTCGATGATGAAGTCAACGGCTGTCGTTTCTGGGTCAACATCGGCGGCTATGGGTATTATGGGTATTTCACCTTTCAAACCCTCTTCAATTATACCTTTTCTCCACGGTTCGAAGTGGCTTCCTTGTAACGAATCTGTTGCTGTTGCCACAACATGGGAGGTTGATAAAGGTGGAACACAGTGCGACACTTTTTCTAATACAAAATCACATTTGAATCAAAAGGAGAATAACAGTGGTTGGATTTCAAAATTGTTAAATGTTTGTTCTGAAGATGCTAAAGCTGTTTTTACTGCTGTTACGGTTAACTTATTGTATAAATCTCATTTGGGTGAACCTAAATCTATTCCTTCTGCTTCAATGTATCCAACACTTGATGCTGGTGACCGTGTTCTTTCAGAAAAGTTTTCTTTCTTCTTCAGAAAGCCTGATGTTTCTGATATTGTGATTTTCAAAGCACCATCTTTTTTGAAGGAATATGGTTTTAGTTCATCTGATGTTTTTATTAAAAGGGTTGTGGCTAAAGCTGGTGATGTTGTTGAAGTTCGTGGTGGAAAACTACTGGTGAATGGTATTGCTGAAGAAGAGGAATTCGTATTAGAACCTCTTGCTTACGAGTTGGCTCCAATGGTTGTGCCAAAAGGACATGTGTTTGTGATGGGAGACAATCGTAACAAAAGTTTTGATTCTCATAACTGGGGTCCACTCCCGATTGAGAACATTGTTGGTAGGTCTATGTTTCGCTACTGGCCTCCATCCAAAGTAGCTGACACTCTCACGGTTCATGCACCCCCACCTGGAAATAAATCTGTTTCAGTTTCTTGA | 1101 | 0.4124 | MAIRVTFSFSGYVAQNLVSSAGVRVGNSRCVQECFILSRLFGSNQKTKPDLDRSGGVGNSYSDFRRPKSCTYSTLAGELLTEGCNNPIILGLISMMKSTAVVSGSTSAAMGIMGISPFKPSSIIPFLHGSKWLPCNESVAVATTWEVDKGGTQCDTFSNTKSHLNQKENNSGWISKLLNVCSEDAKAVFTAVTVNLLYKSHLGEPKSIPSASMYPTLDAGDRVLSEKFSFFFRKPDVSDIVIFKAPSFLKEYGFSSSDVFIKRVVAKAGDVVEVRGGKLLVNGIAEEEEFVLEPLAYELAPMVVPKGHVFVMGDNRNKSFDSHNWGPLPIENIVGRSMFRYWPPSKVADTLTVHAPPPGNKSVSVS* | 367 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tpr3g3424 | 366 | SUPERFAMILY | LexA/Signal peptidase | 200 | 347 | IPR036286 | - | |
| Tpr3g3424 | 366 | CDD | S26_SPase_I | 204 | 336 | IPR019533 | GO:0004252|GO:0006465 | |
| Tpr3g3424 | 366 | ProSitePatterns | Signal peptidases I serine active site. | 210 | 217 | IPR019756 | GO:0004252|GO:0016021 | |
| Tpr3g3424 | 366 | PANTHER | SIGNAL PEPTIDASE I | 1 | 352 | IPR000223 | GO:0006508|GO:0008236|GO:0016020 | |
| Tpr3g3424 | 366 | Pfam | Signal peptidase, peptidase S26 | 185 | 342 | IPR019533 | GO:0004252|GO:0006465 | |
| Tpr3g3424 | 366 | Gene3D | Umud Fragment, subunit A | 199 | 354 | - | - | |
| Tpr3g3424 | 366 | ProSitePatterns | Signal peptidases I signature 3. | 309 | 322 | IPR019758 | GO:0004252|GO:0016021 | |
| Tpr3g3424 | 366 | PRINTS | Bacterial leader peptidase 1 (S26A) family signature | 201 | 217 | IPR000223 | GO:0006508|GO:0008236|GO:0016020 | |
| Tpr3g3424 | 366 | PRINTS | Bacterial leader peptidase 1 (S26A) family signature | 260 | 272 | IPR000223 | GO:0006508|GO:0008236|GO:0016020 | |
| Tpr3g3424 | 366 | PRINTS | Bacterial leader peptidase 1 (S26A) family signature | 304 | 323 | IPR000223 | GO:0006508|GO:0008236|GO:0016020 | |
| Tpr3g3424 | 366 | PANTHER | THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED | 1 | 352 | - | - | |
| Tpr3g3424 | 366 | TIGRFAM | sigpep_I_bact: signal peptidase I | 187 | 343 | IPR000223 | GO:0006508|GO:0008236|GO:0016020 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tpr3g3424 | Tpr-Chr3 | 37756903 | 37759489 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tpr3g3424 | 213 | 343 | MADS-box Gene Family | AT1G29960 | 34.586 | 2.34e-14 | 67.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tpr3g3424 | K03100 | - | gmx:100817525 | 504.212 |
Event-related genes