Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3400 ATGGCAAGGCTTAGTTCTCATCACCATGGCAATATTACTACTATACTATTTGTCTTTGCGCTCCAAGTATTATTACACACACACCTTGTGTTTGCGACATCTGAATCAAATATTGTGAAGTTCCTTCCTGGATTTCAAGGGCCACTTCCTTTTCTACTAGAAACTGGCTACATTGAAGTAAGTGAAACTGAAGCAGATGAGAATGCAGAAGTGTTTTACTATTTTATTGAATCTGAGAACAATCCTAAACAAGATCCTCTCTTGCTTTGGCTTTCTGGTGGTCCTGGTTGCTCTGCTTTCTCTGGCCTTGCTTTTGAAATAGGGCCACTAACATTTATAAATGAAGAATACAATGGGAGCTTACCAAATTTGGAATTGAGGTCACATTCATGGACAAAGGTTAGTAATATTATATTTTTGGATTTGCCTGTTGGAACTGGATTCTCATATCCCAAAACAGAAACTGCTGTTCAACAAGGCACTTGGAAGCTAGTTCACAATGCTCATCAATTTCTTAGGAAGTGGCTGATTGATCATCCAAAATTTCTATCAAATGAAGTGTACATTGCTGGTGACTCATATTCAGGCATTCCTATCCCAATTATTGTTCAAGAAATTTCATATGGAAATGATGATGGCCTCCAACCGTGGATAAACCTCCAGGGATACATATTGGGAAATCCCTTAACAACACCAAAAAATGATGATTACCAAATACCATTTAATCATGGCATGGCACTAATTTCTGATGAACTCTATCAGTCATTGAAAAAGAATTGTAGAGGCGAGTATAAACATATAGATCCCCAAAACGTATTTTGTTTGAAAGATTTCCAATCCTACACGGAGACTATTTCAGGAGTGTGTATTCCTCATATTTTGGAACCGAAATGCGAGACTGACTTTGTTGATACAATTGAGATTCCTCGGAGGACACTTCTTAAAGCTGATCACACCATTTTTAGTTCTTCTCTCACTATGCCACCTTTAAATTGTCGGACTCATGCATATTTCCTCAGTCCCTATTGGGCTAACGATGATAATGTTCGCAAAGCACTGCACATTCGAAAGGAAAGTATAGGAAAATGGAAGAGATGTAACGCGGACATACCTTTTAAGCATGAAACCCTTGACAGCTTTCCATATCATGCAAATCTTAGCAAAAAAGGCTTTCGTTCATTAATATACAGCGGTGATCATGACATGAAAGTTCCATTCTTGGCGACTCAAGCGTGGATAAGATCTTTAAATTACTCTATTGTTGATGATTGGGGGCCATGGTATTATAATGACCAAGTAGCAGGTTACACGAGGACTTACTCAAATCGAATGACATTTGCAACTGTGAAGGGGGGAGGACATACAGCTCCCGAATACAAACCTGAAGAATGCTTAGCCATGTTCACTAGGTGGATATCTAATAACTTACTTTAA 1434 0.3842 MARLSSHHHGNITTILFVFALQVLLHTHLVFATSESNIVKFLPGFQGPLPFLLETGYIEVSETEADENAEVFYYFIESENNPKQDPLLLWLSGGPGCSAFSGLAFEIGPLTFINEEYNGSLPNLELRSHSWTKVSNIIFLDLPVGTGFSYPKTETAVQQGTWKLVHNAHQFLRKWLIDHPKFLSNEVYIAGDSYSGIPIPIIVQEISYGNDDGLQPWINLQGYILGNPLTTPKNDDYQIPFNHGMALISDELYQSLKKNCRGEYKHIDPQNVFCLKDFQSYTETISGVCIPHILEPKCETDFVDTIEIPRRTLLKADHTIFSSSLTMPPLNCRTHAYFLSPYWANDDNVRKALHIRKESIGKWKRCNADIPFKHETLDSFPYHANLSKKGFRSLIYSGDHDMKVPFLATQAWIRSLNYSIVDDWGPWYYNDQVAGYTRTYSNRMTFATVKGGGHTAPEYKPEECLAMFTRWISNNLL* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3400 477 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 19 475 IPR001563 GO:0004185|GO:0006508
Tpr3g3400 477 Gene3D alpha/beta hydrolase 49 477 IPR029058 -
Tpr3g3400 477 Pfam Serine carboxypeptidase 43 474 IPR001563 GO:0004185|GO:0006508
Tpr3g3400 477 SUPERFAMILY alpha/beta-Hydrolases 39 474 IPR029058 -
Tpr3g3400 477 PANTHER 1-O-ACYLGLUCOSE:ANTHOCYANIN ACYLTRANSFERASE 19 475 - -
Tpr3g3400 477 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 139 IPR001563 GO:0004185|GO:0006508
Tpr3g3400 477 PRINTS Carboxypeptidase C serine protease (S10) family signature 140 150 IPR001563 GO:0004185|GO:0006508
Tpr3g3400 477 PRINTS Carboxypeptidase C serine protease (S10) family signature 175 200 IPR001563 GO:0004185|GO:0006508
Tpr3g3400 477 PRINTS Carboxypeptidase C serine protease (S10) family signature 444 457 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3400 Tpr-Chr3 37522088 37526633 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3400 36 67 Calmodulin-binding Proteins AT2G22960 62.500 1.58e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3400 K16296 - gmx:100792006 634.795