Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3397 ATGGTCAAAACACAATTTGGGAAAGGTATCAAAAGAATTCGTTCAGACAATGGTAGAGAATATGTCAATCATACTTTTTCTAACTTCACTAGTAAACATGGCATAATCCATGAATTCACATGTGTCGACACCCCTCAACAAAATGGTGTCGCAGAAAGAAAAAACCGTCATTTACTTGAAGTTGCTCGATGTCTTATGTTTCAAATGTCTGTTCCCACTTCATATTGGGGAGAGGCAGTTCTTACTGTTGTCTATCTGATTAATCGAGTCATATCTCGTGCTTTAGGTAATACCAGTCCCGTTAAATTTATGCTCTCACATTTTCCTTCTGCTCCTATATTACAGAATCTTAAGACTCGTGTGTTTGGTTGTGTTGCTTTTGTTCATGTTCATAAACAATATCGCAACAAGTTGGATCCTCGTGCTGTCAGTTTGTGGTTGCAGGTTGATTCAAAATCTATCTCTGACCAACCAAAATACCACCAAATACATACATCGATTCAACAAAAATTCACGGTAAAGGTGAAAGAGATTAATTCAGACAAAGCTACATGGAATTTTAAGGCAAAAGTTATCAGGCTTTGGGAAGTAAGTGATTTCAATCGTCCTAATAATCCTTTTTCAATCGAAATGGTATTGATGGATTCTGAGGGTGAAAGGATACACGCAACTATAAAGAAAACGCTAATTTATAAGTTTAAAGATGATTTGATGGAAGGAAAAGTGTATAGTTTTGAAAATATGGGTGTTTCGACCAATGGTGGTGCTTATCGTACCACGCACCATCGTTATAAATTGAACTTTCAGTTTGGTTCATTGGTTCAAAGACTTACAAATGTTGATGTTTCTGGGTCTCAGTTTAATTTGGTTCCTATTTCTGATGTTGTCAGCGGAGGTTATGACACTGATTTTTTAGTGGATGTTATTGGTGTTTTGACTGGTGTGGGTACTGAGCGTGAGATAACCAATCAAAATGGAAGCAGCACAAAGCTTAATGTTGTTGCCTTGGAGGCAGATGGGCATAAACTACAGTGCACTTTGTTTGGACCTTATGTTGATGAACTTAATAATTTTCTTGCTTCTGGAGATCACACCAATGCTGTTATGATTGTACAACTTGCAAAGGCAAAGACTTTTCAAGACAAGATTCATATACAAAATTGCATGAATTGCACCCGGCTGTTCTTTAACCCAAATTGTCAGGAAAGTATAATCTTGAAGGAAAGCTTGCCTGAAAGTCTAGAGAGTCCTTCTCCGATGACGCTTACCCAAATCACTGCTGAGCCGGGAGTTAGCCCACTCGATGAGTTCCTATTCAACTCACCAAGAATCACTTTGCAGGCCATGAAAGATGCCACAAATGAATCCGTGAATGTTGTCTGTGCAACTGTCAAAAGGATTTTGAACCCAGAATGCTTCTGGTACACTGCTTGTGTTTGTAACAAATCTGTTATTCCAGATTCAAACATGTTTTTTTGCGACAAATGCAATAAGCATGTGTTGAAGGTTATACCTAGGTATTGCATGAAGGTTAGGGTTATTGATCAGACGGATTCTGCCACATTTGTGATATTTGACAAAGATGCAAGCTCTTTGTTCCAAATGAGCTGTGCTGATATGTTAGATGACATCCAAAGGGTTGCTGGTGTTGGAGGGGTTCCATCTCAATTAACTAGCCTGATTGATAAGACTTGGTTGTTTAAAGTGGAGACCAAACCTTCAAATAATCCTAGATTTGAACAGACATTTAAAGTCAGAAAAATCTGCACCGATGCTAACATAATCAAGCAATTTCAAGACAAGTGGGATCATGAGGAAGCTTCAATTAGCAAGCTAAACAATGAGGTTGGTTCATTGAGTACTTTGATTGGCAAAGGGAAGGATGTATTAGTTTGTGGTTCTACTAATATCTTATCTGAGGATTCACTGTCATTGAATGAAAGTAACTCCAAAGACCAAGGAAAGTCAGTTATTTGTGATAATACTCCTATTGCATGTACCCAAGATTTAATGTGTAAATTTTCTTCTACTGTTGTGGACCTTGACGATCCTTCTCTTGACACTTATATTCGCAACAAAGATGGTGGTGATATAAAGAAAAGTGATATGTCTTCAAAGCTTTCAATTGCTGCAAGTAGTCTAGAGGGAGGAGGAAAGGACATAGTTGTTGAGGCGGTTGATCTTCAAAAATACGTTGGAACAACGACCAAAGAAGAAGCTGTTGAAAAAACTTATAGTGGAGTTGTTCATAAAGATGAATTTGTGGCCAACAAAAACATCAAGGAAGAGAAAACATTGGCTGGATGTGGACAAATGGCAAAAGGCATGGTCATTGAGGGTAGTTCTGTTGGAAAAATTCAACAAATTAAGGGAATGACAAGATCTGATGTTGTCAATCTTGATGAAGATATTCATGAGTCTGGTTCTAGCATGATAATAGCTCCTAATCAAATTGGTTCAACTGACATTAAAGCAATCAAGGGAAAAAAAATAGGCAAGAGAATTTCTCCTCAAAAGGAAGATGAAGATGACAATGCACCTATCAAGCTTTTGAAAAGAGCAATCAAAATTGAAAAGATTACTTAG 2586 0.3755 MVKTQFGKGIKRIRSDNGREYVNHTFSNFTSKHGIIHEFTCVDTPQQNGVAERKNRHLLEVARCLMFQMSVPTSYWGEAVLTVVYLINRVISRALGNTSPVKFMLSHFPSAPILQNLKTRVFGCVAFVHVHKQYRNKLDPRAVSLWLQVDSKSISDQPKYHQIHTSIQQKFTVKVKEINSDKATWNFKAKVIRLWEVSDFNRPNNPFSIEMVLMDSEGERIHATIKKTLIYKFKDDLMEGKVYSFENMGVSTNGGAYRTTHHRYKLNFQFGSLVQRLTNVDVSGSQFNLVPISDVVSGGYDTDFLVDVIGVLTGVGTEREITNQNGSSTKLNVVALEADGHKLQCTLFGPYVDELNNFLASGDHTNAVMIVQLAKAKTFQDKIHIQNCMNCTRLFFNPNCQESIILKESLPESLESPSPMTLTQITAEPGVSPLDEFLFNSPRITLQAMKDATNESVNVVCATVKRILNPECFWYTACVCNKSVIPDSNMFFCDKCNKHVLKVIPRYCMKVRVIDQTDSATFVIFDKDASSLFQMSCADMLDDIQRVAGVGGVPSQLTSLIDKTWLFKVETKPSNNPRFEQTFKVRKICTDANIIKQFQDKWDHEEASISKLNNEVGSLSTLIGKGKDVLVCGSTNILSEDSLSLNESNSKDQGKSVICDNTPIACTQDLMCKFSSTVVDLDDPSLDTYIRNKDGGDIKKSDMSSKLSIAASSLEGGGKDIVVEAVDLQKYVGTTTKEEAVEKTYSGVVHKDEFVANKNIKEEKTLAGCGQMAKGMVIEGSSVGKIQQIKGMTRSDVVNLDEDIHESGSSMIIAPNQIGSTDIKAIKGKKIGKRISPQKEDEDDNAPIKLLKRAIKIEKIT* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3397 861 CDD RPA1_DBD_C 460 588 IPR013955 -
Tpr3g3397 861 Gene3D - 439 599 IPR012340 -
Tpr3g3397 861 PANTHER REPLICATION FACTOR A 1, RFA1 189 541 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr3g3397 861 SUPERFAMILY Nucleic acid-binding proteins 173 280 IPR012340 -
Tpr3g3397 861 CDD RPA1_DBD_A_like 188 274 - -
Tpr3g3397 861 ProSiteProfiles Integrase catalytic domain profile. 1 108 IPR001584 GO:0015074
Tpr3g3397 861 Pfam Domain of unknown function DUF223 210 305 IPR003871 -
Tpr3g3397 861 Gene3D - 170 276 IPR012340 -
Tpr3g3397 861 Gene3D - 281 416 IPR012340 -
Tpr3g3397 861 SUPERFAMILY Ribonuclease H-like 2 113 IPR012337 -
Tpr3g3397 861 Pfam Replication factor-A C terminal domain 462 572 IPR013955 -
Tpr3g3397 861 Gene3D - 1 110 IPR036397 GO:0003676
Tpr3g3397 861 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 189 541 - -
Tpr3g3397 861 CDD RPA1_DBD_B_like 307 402 - -
Tpr3g3397 861 SUPERFAMILY Nucleic acid-binding proteins 454 588 IPR012340 -
Tpr3g3397 861 SUPERFAMILY Nucleic acid-binding proteins 286 413 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3397 Tpr-Chr3 37485732 37491364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3397 136 537 Core DNA Replication Machinery Family AT2G06510 24.074 9.32e-21 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3397 - - mtr:MTR_4g036240 605.52