Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3393 ATGCTGACACACAACCACCGCTATCACATGGCAGCATCTTCATTCTTCACCATCACTAATCTCATTCTTCTACTATTATTATTACAACAACACTCCATAACTGTTTTTGTTCTTGCATTTACAGAAACAAGTCCACCCCCAACTCCCATTCCCCAAGACGCAACTGCCATTTCTCAACAACACACCTTCACACCATTCAAACCAAGCGTAGCTATTGTAATCAGCGTTTTCACTGTCCTTTTTTCAGTAACCTTTCTTCTCCTTCTCTACATCAAACATATCAACAACAACAACAACAACGCTGAAACAATCAATATCGAAAGTAGTAGCTACGGCGGCGGAATTTCGTCTTTTAGCGGCGGAAGAAAAAACTCCGGCGTCGACCGTTCTGTAGTTGAATCGTTACCGATTTTCAAATTCGGATCACTTACAGGCCAAAAAGACGGTCTAGATTGCGCGGTTTGTCTCTCGAAATTCGAATCCACGGAAGTTTTACGGTTATTGCCGAAATGTAAACACGCTTTTCACGTTGAATGTGTTGATACTTGGTTAGATGCACATTCAACTTGTCCTCTTTGCCGTTACAGAGTCGATCCTGAAGATATTCTTCTCGTAATGGAAAATTCACCATCATCAGTGTCACGTGATTCACGCCAGATTCAGAATCAGAAAGAACAAGAAGAAGAAGATGAATGTGTGGTTGAGATTGAAAGAGGAACAATGACGAGAAACGAAATTGCAGAGTATTATAGAAAGAGGCATTCATCGGTTGGAGAAAAGGAATGGGAACGAGAACGAGAAAAAAGGAAAACGGCGTCGTTTAGGTGGTCATTAGATAGTTCTAGAAAGAAGAACGATAGTTCTGTTGGAATTGGGCTTGGTTGTTTTGTTGGGCCGGGGCCCAGAAAAGACGGTATGTTGTTAACAAAAGAAGAGAAACTGATGACGGAGAGGAGTAGCGTGGAGCGGAGAAGAAGGTTGGAGCATAGGATTATTGTGTCACCATCAGTAACTACTACTAATATAAGAAGTGGGCTCCACAAGAATCAACGGTGGAGTGATGTACAACCGTGTGATCTATTGTATCTAACTTCAGAGATGATGATAATGAGTGAGTCACGGAGAGTGATGAAGAAGAAGAAGAGGAATAGTAATAATGATAGTTGTTGGAATGACAGAGGAGAAATTAATTCGAGAAGTGTGTCTGAAATCACGGGATTCAGTAGGTTTCAAAGCAACATTACTACCAAGCAATAA 1257 0.4121 MLTHNHRYHMAASSFFTITNLILLLLLLQQHSITVFVLAFTETSPPPTPIPQDATAISQQHTFTPFKPSVAIVISVFTVLFSVTFLLLLYIKHINNNNNNAETINIESSSYGGGISSFSGGRKNSGVDRSVVESLPIFKFGSLTGQKDGLDCAVCLSKFESTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVMENSPSSVSRDSRQIQNQKEQEEEDECVVEIERGTMTRNEIAEYYRKRHSSVGEKEWEREREKRKTASFRWSLDSSRKKNDSSVGIGLGCFVGPGPRKDGMLLTKEEKLMTERSSVERRRRLEHRIIVSPSVTTTNIRSGLHKNQRWSDVQPCDLLYLTSEMMIMSESRRVMKKKKRNSNNDSCWNDRGEINSRSVSEITGFSRFQSNITTKQ* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3393 418 CDD RING-H2_EL5_like 151 194 - -
Tpr3g3393 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 201 IPR013083 -
Tpr3g3393 418 SMART ring_2 152 193 IPR001841 -
Tpr3g3393 418 SUPERFAMILY RING/U-box 132 199 - -
Tpr3g3393 418 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 47 415 - -
Tpr3g3393 418 MobiDBLite consensus disorder prediction 213 232 - -
Tpr3g3393 418 ProSiteProfiles Zinc finger RING-type profile. 152 194 IPR001841 -
Tpr3g3393 418 Pfam Ring finger domain 151 194 IPR001841 -
Tpr3g3393 418 PANTHER RING-H2 FINGER PROTEIN ATL43 47 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3393 Tpr-Chr3 37429809 37431557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3393 60 409 C3H Transcription Factor Family AT5G05810 45.924 1.63e-75 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3393 K19041 - egr:104437323 283.878