Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3391 ATGCAACATTTTCTATTTCTGAGTTTGATTCAGGTGATAATGTTAATACAAAGTTCTCTTCTTAGTTCAGTTGAAGCTGGTCTATGTTATGCATTTGATGATGGGAAAGATTTTCATTGTGACTGGATGCCTAGTGGTGAAACTTGTCAGGTTTGTCTGAAATGCAACAAGTACCCTGTTGACCGGTGTCGAAAAGCTGAACCAATGGAAGGGGATAGAAGGAATGCCGAAGATCCTTACAACTCAAACTGTCTAAGAAGCTGTGGTCAACCATCAACTGCAAGTATAATGACTGAAAATACCGCACCTAATATAGTATACAGGAGAAAAGCTAAACCAATGGAAGGGGATAGAAGGAATGCTGATGATCTTTACAACTCAAACTGTCTAAGAAGCTGTGGTCAACCATCAACTGCAAGTATAACGACTGAAAACACCGCACCTAATATAGTATACAAGAGAAAAAAGCTACGCAAGGGATCAATTGCTCCTCATTTCAAGCCAGGGCCAACCGATGTGCAGACAAGTGCCAATTTCCTTTCAGTCACAAGTTCCTCTTTGCATTTATCATCAGCTGAGGATCAAACAGCTGCTTTTCCAGTTAAGCATCAGATTGAAATGGTCAAAGATCCTACTCTGCCTTCTGTCTTTCTTGATGGAGTAGCCAAAGATACCACACAGAAAAAATTAGGTATTGACAGTGTAAATGATAGTTGCTCATCTTCAAAGTCAAATATGGTACTTGTTTCAGATTCCATAGAAACTGAGATGGATGTCACTGGCGAATGCTCCTCCTCCAGTGTCATAGCAATGGATGTCGCAAGAGAAGATTTAACAGAGAAGGATTTCTGCATTAATATTTTAAGAAGCCATGGACTTTTTAGAGGAGATAATGTTACAGATAATGTGGTTTCTGTTGAAGGCGCTGTTACCAGAGATAGTAATTTCTGTTCCAGGTCATGCAAAATATGTGGTCATTCGGACAGTTCATTGAAAATGATTTTATGTGATAATTGTGAAGATTCATATCATCCATCTTGCTACAGTTCACGCTTGAAAAGAATACCAATAGATGAGTGGTTTTGTCATTCATGTCTTAATAAAAGGCATCAAATTCTTAAGAAAATTATCAAATCACCAGGTATCAACAGTGAAATGACGAAATGTAGAACTATCTCAGGTAAGGATGAAATGAATCCCATACTGTTGATGTTGAGAGATACTGAGCCATATACAACTGATGTGCGAGTTGGTAAAGGTTTTCAAGCAACAGTACTTGACTGGTCAGGCCCTGTAAAAAGTGATGAAGATGACTTTCCTGAACCATTGGAAATTACTTCTTCAGAGTTTTATAGACCGCAGGAAGAGAATATAAGAAATCCAACTAGACTCGGTTCTATTGGCAATTGGCTTCAATGTCGGGAGGTTATAGATAAAACTAGTAGAACAATATGCGGGAAATGGCGCAGGGCTCCACTATTTGAAGTTCAAATCGATGACTGGGAATGCTTCTGTGCTATTAATTGGGATCCATTGCATGCTGATTGTGCTGTACCTCAGGAGGTGGAGACAGATGAAGTTTTGAAGCAACTGAAGTATATAGAAATGTTGAGGCCGCGACTTGCTGCTAAACAAAGAAAATCAGACTGCACAAAGAATGGTGATTGA 1668 0.3909 MQHFLFLSLIQVIMLIQSSLLSSVEAGLCYAFDDGKDFHCDWMPSGETCQVCLKCNKYPVDRCRKAEPMEGDRRNAEDPYNSNCLRSCGQPSTASIMTENTAPNIVYRRKAKPMEGDRRNADDLYNSNCLRSCGQPSTASITTENTAPNIVYKRKKLRKGSIAPHFKPGPTDVQTSANFLSVTSSSLHLSSAEDQTAAFPVKHQIEMVKDPTLPSVFLDGVAKDTTQKKLGIDSVNDSCSSSKSNMVLVSDSIETEMDVTGECSSSSVIAMDVAREDLTEKDFCINILRSHGLFRGDNVTDNVVSVEGAVTRDSNFCSRSCKICGHSDSSLKMILCDNCEDSYHPSCYSSRLKRIPIDEWFCHSCLNKRHQILKKIIKSPGINSEMTKCRTISGKDEMNPILLMLRDTEPYTTDVRVGKGFQATVLDWSGPVKSDEDDFPEPLEITSSEFYRPQEENIRNPTRLGSIGNWLQCREVIDKTSRTICGKWRRAPLFEVQIDDWECFCAINWDPLHADCAVPQEVETDEVLKQLKYIEMLRPRLAAKQRKSDCTKNGD* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3391 555 Pfam PHD-finger 321 367 IPR019787 -
Tpr3g3391 555 SUPERFAMILY FYVE/PHD zinc finger 319 373 IPR011011 -
Tpr3g3391 555 PANTHER HISTONE ACETYLTRANSFERASE 40 110 - -
Tpr3g3391 555 PANTHER HISTONE ACETYLTRANSFERASE 113 548 - -
Tpr3g3391 555 ProSitePatterns Zinc finger PHD-type signature. 321 365 IPR019786 -
Tpr3g3391 555 ProSiteProfiles Zinc finger CW-type profile. 464 524 IPR011124 GO:0008270
Tpr3g3391 555 PANTHER REMODELING AND SPACING FACTOR 1 113 548 - -
Tpr3g3391 555 PANTHER REMODELING AND SPACING FACTOR 1 40 110 - -
Tpr3g3391 555 Gene3D - 468 533 - -
Tpr3g3391 555 ProSiteProfiles Zinc finger PHD-type profile. 318 368 IPR019787 -
Tpr3g3391 555 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 308 393 IPR013083 -
Tpr3g3391 555 SMART PHD_3 320 366 IPR001965 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3391 321 366 C2H2 Transcription Factor Family AT3G01460 41.304 4.77e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr3g3391 PHD 6.3e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3391 - - gmx:100813057 692.96