Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3389 ATGGTGCATGATCTTATACTTCAGTTCAATTCAACTATGGCATATTCAGGATCAATTCAATTGTCTCGCGACTTTAGGCAATACTTTAGTAATGGAAGATGTAGTTTTTGTCATAAACCTAATTCCGGTAATCGATTATGTTTTGTCGCCTTCAATCATCCGCGGCATAGTTTGAGGATGGATTCTTCAGCACTCATATTTTCCAGATTACATGTCCAAATTAAGCCTGTGCCTTCTAGATCTAATGTTTTGTTGTGCCGGTCGGCCCTGGTACCGGCTGGAGGGTGTGAGGCTCCGCTGATGAAAGTGGCTACTGTTTCTTTGTCAAGGTCATATAATGCTATATCAGGAGGACCAATTGTGCTTCAATTGATCCCTGCCCTTGGTATCATTGGCTTTGCCGCCTTTGGTCTTGAACCTCTCATGCGGCTTTGCAGGGCTCTATTTCTCCAAGAATGGAACGATAAAAGTTGGAAGAAAAGTACTTCACGTTATATAATGACATCTTATTTTCAACCTTTGCTGCTGTGGACTGGGGTAATGCTCATCTGCAGGAGTTTAGATCCACTAGTTCTACAGTCAGAAACACGTCCGGTTATAAAGCAAAGGCTGTTGAGTTTTGTCAGATCTTTTTCAACTGTGTTTACATTTGCTTATTGTTCTTCAAGCTTTGTTCGACAAGCACAAAACTTCTGTAAGGAGACAAAGGACACCAGTGATGAAAGAAAAATGAGCATTGATCTTATTGGGAAAGCTGTATATACTGCAATATGGGTTGCTGCCGTGTCATTGTTCATGGAGTTGCTGGGTCTCTCCACACAAAAGTGGTTGACTGCTGGTGGTATGGGTACAGTATTGCTGTCGCTTGCAGGTCGTGAGATATTCACGAACTTCCTTTCAAGTATGATGATTCATGCAACTCGACCATTTGTTGTGAACGAGCGGATTAAAACAAAGATTAAAGGATACGAGGTTTCTGGTAGAGTTGAGCATGTAGGTTGGTGGTCACCAACAATAGTTAGAGGTGCTGATTGCGAAGCTGTTCACATTCCTAATCATAAATTGAGTGTAAATGTTGTGAGAAATCTTAGTAAGAAAACTCACTGGCGCATCAAAACTCACCTGGCTATCAGTCACTTGGATGTAAACAAGATTAATAGCATCATAGCTGATATGCGCAAGGTTTTGGCTAAAAATCCTTTAGTAGAGCAGAAAAAATTGCACAGACGGGTTTTTCTGGAGGATGTCAATCCAGAAAACCAGGCTCTTATGATATTAGTATCTTGCTTTGTTAAAACTCCACATTCTGAAGAGTACCTCCGTGTTAAGGAGGACATTCTCTTGGATCTTCTTAAAGTCATCGGTCATCATGGAGCTCGGCTAGCCACACCCATCCGCACAATTCAAAAGATGTACGGTGATCCTGATTTAGAAATTGATCCATTTGACGACGCCATTTTAACTCGTTCCAGCGCAAAGGGAAATCGCTCTATCCCATTCATAGATCTACCTTATAAAGTTAAGCCTTCAACTCAATCGATTATTGTAAACGGTGAAAAAGATGCCAAGATTCGTGAAACCTTAGTATCTGGTTTCAAAGATGAAGGTGAAAAAATTGCCGCGACATGGACCCCTTCTTCTACTGCAAAGTCCCAGGATAAATTCAAGTCATCATCTCAAGCCAAGACCCAAAATGTGGGTTCTACTTCTGATAACTTAGTCCAGAAGGCCTCTAAATCTGGAACAACACCCCAAATTTTGTTATCATCTGATGAAACTTCACCGTCAAAGAAAGATGAAGAGAAATGA 1809 0.4107 MVHDLILQFNSTMAYSGSIQLSRDFRQYFSNGRCSFCHKPNSGNRLCFVAFNHPRHSLRMDSSALIFSRLHVQIKPVPSRSNVLLCRSALVPAGGCEAPLMKVATVSLSRSYNAISGGPIVLQLIPALGIIGFAAFGLEPLMRLCRALFLQEWNDKSWKKSTSRYIMTSYFQPLLLWTGVMLICRSLDPLVLQSETRPVIKQRLLSFVRSFSTVFTFAYCSSSFVRQAQNFCKETKDTSDERKMSIDLIGKAVYTAIWVAAVSLFMELLGLSTQKWLTAGGMGTVLLSLAGREIFTNFLSSMMIHATRPFVVNERIKTKIKGYEVSGRVEHVGWWSPTIVRGADCEAVHIPNHKLSVNVVRNLSKKTHWRIKTHLAISHLDVNKINSIIADMRKVLAKNPLVEQKKLHRRVFLEDVNPENQALMILVSCFVKTPHSEEYLRVKEDILLDLLKVIGHHGARLATPIRTIQKMYGDPDLEIDPFDDAILTRSSAKGNRSIPFIDLPYKVKPSTQSIIVNGEKDAKIRETLVSGFKDEGEKIAATWTPSSTAKSQDKFKSSSQAKTQNVGSTSDNLVQKASKSGTTPQILLSSDETSPSKKDEEK* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3389 602 PANTHER MECHANOSENSITIVE ION CHANNEL-LIKE PROTEIN 13 602 - -
Tpr3g3389 602 MobiDBLite consensus disorder prediction 544 592 - -
Tpr3g3389 602 MobiDBLite consensus disorder prediction 544 602 - -
Tpr3g3389 602 SUPERFAMILY Sm-like ribonucleoproteins 294 364 IPR010920 -
Tpr3g3389 602 Gene3D - 204 308 - -
Tpr3g3389 602 Pfam Mechanosensitive ion channel 251 460 IPR006685 GO:0016020|GO:0055085
Tpr3g3389 602 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 13 602 IPR045042 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3389 Tpr-Chr3 37390734 37395819 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3389 13 602 Mechanosensitive Ion Channel Family AT1G58200 50.993 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3389 K22047 - gmx:100797302 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3389 3 37390734 37395819 Tpr3g3389 3 37390734 37395819 ECH