Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3373 ATGTACAACTCTATGAACATCTCCGATCAGATCAAGAACAACGACGAAACCGACAACAACAACAATCACATCCATTACGATTCACATAATCTCGAAGACGCTTCCGGTGAAGCTGAAGGAAATATCCAAGACGTTTCACTCGATGATGTTTATGTTTCCGGTGACGGAAATCACCCTGATATGTCTATTCAACGATTCGATGATTCTTCTCAGCTCACGCTTTCTTTTCGTGGCCAAGTTTATGTCTTCGATTCTGTTACCCCTGAAAAAGTTCAATCGGTTTTGTTACTGTTAGGAGGATGTGAATTATCTTCGGGTTCGCAATGTTTGGATACATCGCCCCTTAATCAAAGGAGTGGTACTGAATTTCCTACAAGATGTAGTCAGCCACAGCGTGCAGCGTCGTTGATTAGGTTTCGTCAGAAGAGGAAAGAGAGAAACTTTGATAAGAAAGTTAGATATGAAGTGCGTCAAGAAGTTGCACTAAGGATGCAACGTAGTAAGGGTCAATTTACGTCATCTAAGAAACAAGATGGAGCTAACAATTATGGCTCTGATCCAGAGTCAGGGCAGGATATGATTCAATCAGAAACCTCATGCACGCACTGTGGAATCAGTTCAAAATCAACCCCTATGATGCGAAGGGGGCCATCTGGCCCAAGGACACTTTGTAATGCTTGTGGGCTGTTTTGGGCAAATAGGGGTACTCTGAGGGATCTATCTACTTCTAGGAGAAATCACGAGCAACACACTATTGTGCCACCTGAGCAGGGTGCTATGAGGGATCTTTCTAATTCTAAGAGAAACCACGAACCGCACACTCTTCCACCACCTGAGCAGGTTGGCGAGGGCAATGACTTGAACTGTGAGACTGCTCTTCCTGCGCATAACGATTCTGTTGATGATAAAACAGCTTTGGTATCCAATCAATGA 933 0.4384 MYNSMNISDQIKNNDETDNNNNHIHYDSHNLEDASGEAEGNIQDVSLDDVYVSGDGNHPDMSIQRFDDSSQLTLSFRGQVYVFDSVTPEKVQSVLLLLGGCELSSGSQCLDTSPLNQRSGTEFPTRCSQPQRAASLIRFRQKRKERNFDKKVRYEVRQEVALRMQRSKGQFTSSKKQDGANNYGSDPESGQDMIQSETSCTHCGISSKSTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSTSRRNHEQHTIVPPEQGAMRDLSNSKRNHEPHTLPPPEQVGEGNDLNCETALPAHNDSVDDKTALVSNQ* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3373 310 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 197 255 - -
Tpr3g3373 310 ProSitePatterns GATA-type zinc finger domain. 200 227 IPR000679 GO:0006355|GO:0043565
Tpr3g3373 310 Gene3D - 191 251 IPR013088 GO:0006355|GO:0008270
Tpr3g3373 310 ProSiteProfiles CCT domain profile. 132 174 IPR010402 GO:0005515
Tpr3g3373 310 PANTHER GATA TRANSCRIPTION FACTOR 25 11 270 - -
Tpr3g3373 310 ProSiteProfiles Tify domain profile. 65 100 IPR010399 -
Tpr3g3373 310 SMART GATA_3 194 247 IPR000679 GO:0006355|GO:0043565
Tpr3g3373 310 Pfam tify domain 69 99 IPR010399 -
Tpr3g3373 310 MobiDBLite consensus disorder prediction 241 288 - -
Tpr3g3373 310 Pfam CCT motif 132 174 IPR010402 GO:0005515
Tpr3g3373 310 SMART tify_2 65 100 IPR010399 -
Tpr3g3373 310 MobiDBLite consensus disorder prediction 166 197 - -
Tpr3g3373 310 CDD ZnF_GATA 199 241 IPR000679 GO:0006355|GO:0043565
Tpr3g3373 310 PANTHER GATA TRANSCRIPTION FACTOR 28 11 270 IPR045280 GO:0006355
Tpr3g3373 310 ProSiteProfiles GATA-type zinc finger domain profile. 194 250 IPR000679 GO:0006355|GO:0043565
Tpr3g3373 310 Pfam GATA zinc finger 200 236 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3373 Tpr-Chr3 37216743 37222182 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3373 69 308 Tify Gene Family AT4G24470 54.878 7.83e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tpr3g3373 CCT 9.2e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3373 - - pvu:PHAVU_008G182900g 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3373 3 37216743 37222182 Tpr3g3373 3 37216743 37222182 ECH
Tpr4g2536 4 27581911 27587817 Tpr3g3373 3 37216743 37222182 PCT