Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3351 ATGAACACTTTCCCACTCAAATCACACTTCAATTTCAATCATGCTTTTCCCTACCTCTTCCTCATGCTCCTCCTTTTCTTCATCATCATTCTTCCACCGCCGGCAACGGCACAGATACTGAATACAAAACCACCACCACCACCGGCGGTGGATAGAATTTCCAAGCTCAAATTCGACAAATCCATGGCAATTGTGTTAGTAATCTTAGTAGCTGAGTTTTTCATCCTCGGTTTTCTCTCCGTCTACACTCGTCAGTGTGCAGAACAGAGAATTAGAGGAAGATTCGATTTATCAATTCCGATCGTCGGAAGTAACCGGAGACACCGTGGACTTGATTCCGAAATCATCGAAACGTTTCCGACGTTTGTTTATTCCACCGTGAAAGGTCATAAAATTGGAAGAGCCGCGCTAGAATGCGCCGTTTGTTTAAACGAATTTCAAGATGATGAAACGCTGCGTTTGATTCCTAATTGTTGCCACGTGTTTCATCCTGAATGTATTGATGCTTGGCTTGTTAATCACTCCACGTGTCCCGTTTGTCGCGCCAATTTAATTCCAAAACCCGGATCCAATTTCGTTTCAATTCAGATTCCGGATTTGGATACATCCGATTCAGATGACCCGACCCGAAATAATACGGTTTCCGAAACCGCTGCTAGAGATACAGTTATTATTACATCTCGTTCTCCTTCTCCTAAGGTGAATTATTCGGTTACACCGAACCGGGCTCGACCGGTTCGGTCAAGTTCAACCGGGTTTAAACTTGGAAACTGGCTACCATTTCCACGGTCGCATTCTACGGGTCATTCATTGGTTCAAGAAGGGGAGAGTCATGAGCGGTTCACGTTGAGATTACCGGAGGAAGTTCGGAACCGGTTGATGGGTTCAAGTTCAACGCCGAGTTGTGGTGTTAGTTTTACTCGAGAGGGAAGTGGGAGGAGGGGTTATAGAACGAGGAGTGTGGGAAGTAGTGCTCCTGGGAGGAATTATGAGTGGTTTAACCGGCCGGACCGGAGAGGATTTTCTTGTACGCCGCCGTTTATGGGTCGAACCGGAACCGGTTCGAGTTGGTTGAAGAATAAGTCACCTGGGAAATTGGATGATGTGGGAGAACGGTCTTCTGATCACTTGTTTGAAGGTAATCGGGTTTAG 1152 0.4618 MNTFPLKSHFNFNHAFPYLFLMLLLFFIIILPPPATAQILNTKPPPPPAVDRISKLKFDKSMAIVLVILVAEFFILGFLSVYTRQCAEQRIRGRFDLSIPIVGSNRRHRGLDSEIIETFPTFVYSTVKGHKIGRAALECAVCLNEFQDDETLRLIPNCCHVFHPECIDAWLVNHSTCPVCRANLIPKPGSNFVSIQIPDLDTSDSDDPTRNNTVSETAARDTVIITSRSPSPKVNYSVTPNRARPVRSSSTGFKLGNWLPFPRSHSTGHSLVQEGESHERFTLRLPEEVRNRLMGSSSTPSCGVSFTREGSGRRGYRTRSVGSSAPGRNYEWFNRPDRRGFSCTPPFMGRTGTGSSWLKNKSPGKLDDVGERSSDHLFEGNRV* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3351 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 186 IPR013083 -
Tpr3g3351 383 MobiDBLite consensus disorder prediction 364 383 - -
Tpr3g3351 383 CDD RING-H2_PA-TM-RING 138 181 - -
Tpr3g3351 383 SMART ring_2 139 180 IPR001841 -
Tpr3g3351 383 SUPERFAMILY RING/U-box 133 188 - -
Tpr3g3351 383 PANTHER RING FINGER DOMAIN-CONTAINING 19 305 - -
Tpr3g3351 383 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Tpr3g3351 383 Pfam Ring finger domain 138 181 IPR001841 -
Tpr3g3351 383 MobiDBLite consensus disorder prediction 352 383 - -
Tpr3g3351 383 PANTHER RING-H2 FINGER PROTEIN ATL11 19 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3351 Tpr-Chr3 36958015 36959732 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3351 9 351 Rapid Response to Elicitors AT3G05200 37.360 9.10e-64 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3351 K10664 - gmx:100807828 365.54