Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3350 ATGGCACTTGAAACTGTTGTTTACCCACAAGATCCATTTAATTATAGTTACAAAGATAATTACTTCAACTCATTGAGCAGTGATTATGTTAGTGTTACTACTAATCTTGAAGCTGAAGAACAAGAGAATGTTCTCCTAGGAATCATCAACAACAACGTTGAACAACAACAACAACAACAAAATTTCCATGCAAATTGGGATTCTTGTTCTGTTAAAGATCAATGGCTAGAATATTCACACTCTTCATCTCCTGAAATCTGCACCGTTGATCAAACTATAACAGCACCTTCATTGCTTATTCCTCCTTCTTCTTCTACCACCATGGAAGAAGCTACAACAACTGCCACTTGTCGAAGAAAACGACGTCGAATCAAGAGTGCAAAGAACAAAGAAGAGATTGAAAATCAAAGGATGACTCACATTACTGTTGAAAGAAATCGAAGGAAACAAATGAATGAATACTTGAATGTTCTTCGATCTTTGATGCCTTCTTCATATGTTCAAAGGGGTGACCAAGCTTCAATTATTGGTGGAGCAATAAACTTTGTGAAAGAGTTAGAACAACTTTTACAATCCATGGGGGGCCAAAAGAAAACACAAGAGAATATTGGCTTAAATAATGGACCACCTTTTTCTGAGTTCTTCACTTTTCCTCAATACACAACAAGTGCAACAACAACAACAACTCATAACACCAACATGGTCACAATGGAACAAAAACAATGGGCTGTTGCAGACATTGAAGTTACAATGGTAGATAGTCATGCCAATATGAAAATTATGTCCAAGAAAAAAACAGGACAACTTATGAAGATTGTTGTTGGGTTACAAAATCTTAGGCTTACAATTCTTCACCTAAATGTTACCACTTTGGATGATATGGTCCTTTACTCAATTAGTGTCAAGGTAGAGGAGGGGAGTCAGCTGAATAGTGTGGATGAAATTGCGGCTGCTGTGAATCAACTATTAAGGACGGTCCAACAAGAACTGGATTATCAACTAAATTGA 1008 0.3671 MALETVVYPQDPFNYSYKDNYFNSLSSDYVSVTTNLEAEEQENVLLGIINNNVEQQQQQQNFHANWDSCSVKDQWLEYSHSSSPEICTVDQTITAPSLLIPPSSSTTMEEATTTATCRRKRRRIKSAKNKEEIENQRMTHITVERNRRKQMNEYLNVLRSLMPSSYVQRGDQASIIGGAINFVKELEQLLQSMGGQKKTQENIGLNNGPPFSEFFTFPQYTTSATTTTTHNTNMVTMEQKQWAVADIEVTMVDSHANMKIMSKKKTGQLMKIVVGLQNLRLTILHLNVTTLDDMVLYSISVKVEEGSQLNSVDEIAAAVNQLLRTVQQELDYQLN* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3350 335 PANTHER MAX DIMERIZATION, MAD 1 329 - -
Tpr3g3350 335 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 329 - -
Tpr3g3350 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 198 IPR036638 GO:0046983
Tpr3g3350 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 186 IPR011598 GO:0046983
Tpr3g3350 335 Gene3D - 113 202 IPR036638 GO:0046983
Tpr3g3350 335 Pfam Helix-loop-helix DNA-binding domain 136 187 IPR011598 GO:0046983
Tpr3g3350 335 CDD bHLH_AtFAMA_like 138 201 - -
Tpr3g3350 335 SMART finulus 141 192 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3350 Tpr-Chr3 36929669 36932468 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3350 1 303 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 45.231 5.61e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr3g3350 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3350 - - gmx:100805420 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3350 3 36929669 36932468 Tpr3g3350 3 36929669 36932468 ECH