Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3348 ATGGCGCTACTACGTACTATTCCATGTTCAACTCAATTATCCACAAAACAACACTTCGACTTTGAAAACAACAACAAGAAACATTCTTCTACAAATCCCTTCTTTTCTTCTTCTTCCTTTCACTCTCATCTTCGTCTATCCATTTCTCATACCTCAACAACAACCCTTATCAGAACAAAACAACACTCTAATTCTACTCTCAGATTCACCTCTACTTCAGAACAACAAATTCAAGTAACCACCGAAGAACAACAACAACAAGACACAGAAAAAGAACAAAAACAAGAACAAGAACAAGAAGAAGAAGTGTCTCCTACTAGGTTGCTTGCTCAGAATTTTCCATGGACAAGTACTGCTGAAGATGTTCGTACTTTGTTTGGAAAATACGGAAAAGTTGTTGATGTTGAGCTTTCTATGTATAATAAGTACAGAAACAGGGGTTTAGCTTTTGTGGAAATGGGTTCCCCTGAAGATGCTCTTGCTGCTTTCAATAGTCTTCAATCGTATGAGTTTGAGGGCCGTGTAATAAATGTCAAATATGCTCGGCCTAAAAAGGAGAAAACACCGCCACCAGTGGGACGAAATCCGATAACATTTAAATTGTTTGTTGCAAATTTGTCCTATGAAACAAGGGCTAAAGATCTCAGAGAGTTTTTTGATTCGGGAACTAGTAAAGTTGTTTCTGCAGATGTTGTATTTCGCGAGAATCCTAGAAGGCCAGCTGGTTATGGATTTGTGGCCTTCAAGTCCAAGAAAGAAGCTACTGAAGCTCTTTCCGAGTTTCAAGGAAAGACTTTAATGGGAAGGCCAATTAGGGTTGCACCTGGTAGGCGATTTGTTCAACCGGTAGAGGAGAGTGCAGGATCTGAAAATACATCTTTTGAGTCGAGCGTCAATGAGGAGGCAGAAGTTAACAAAGCTGATTGA 927 0.3959 MALLRTIPCSTQLSTKQHFDFENNNKKHSSTNPFFSSSSFHSHLRLSISHTSTTTLIRTKQHSNSTLRFTSTSEQQIQVTTEEQQQQDTEKEQKQEQEQEEEVSPTRLLAQNFPWTSTAEDVRTLFGKYGKVVDVELSMYNKYRNRGLAFVEMGSPEDALAAFNSLQSYEFEGRVINVKYARPKKEKTPPPVGRNPITFKLFVANLSYETRAKDLREFFDSGTSKVVSADVVFRENPRRPAGYGFVAFKSKKEATEALSEFQGKTLMGRPIRVAPGRRFVQPVEESAGSENTSFESSVNEEAEVNKAD* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3348 308 Coils Coil 77 102 - -
Tpr3g3348 308 SMART rrm1_1 200 274 IPR000504 GO:0003723
Tpr3g3348 308 SMART rrm1_1 107 179 IPR000504 GO:0003723
Tpr3g3348 308 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 1 304 - -
Tpr3g3348 308 Gene3D - 194 302 IPR012677 -
Tpr3g3348 308 MobiDBLite consensus disorder prediction 57 84 - -
Tpr3g3348 308 SUPERFAMILY RNA-binding domain, RBD 105 275 IPR035979 GO:0003676
Tpr3g3348 308 CDD RRM_SF 201 273 - -
Tpr3g3348 308 MobiDBLite consensus disorder prediction 85 103 - -
Tpr3g3348 308 MobiDBLite consensus disorder prediction 285 300 - -
Tpr3g3348 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 176 IPR000504 GO:0003723
Tpr3g3348 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 272 IPR000504 GO:0003723
Tpr3g3348 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 278 IPR000504 GO:0003723
Tpr3g3348 308 MobiDBLite consensus disorder prediction 57 105 - -
Tpr3g3348 308 PANTHER OS08G0483200 PROTEIN 1 304 - -
Tpr3g3348 308 MobiDBLite consensus disorder prediction 283 308 - -
Tpr3g3348 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Tpr3g3348 308 Gene3D - 66 193 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3348 106 278 Eukaryotic Initiation Factors Gene Family AT4G34110 29.348 3.14e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3348 - - gmx:100806480 291.967