Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3326 ATGGAGAACAACCACAACAACCAACAACAATATCCAACGCCACAACCCACGGCGGTTACATCTGCAGCACCATTCCAACACCTCCTCCAACAACAACAACAACAGCTTCAAATGTTCTGGTCATACCAAAGACAAGAAATCGAACACGTTAACGACTTCAAAAACCACCAACTACCATTAGCACGCATTAAGAAAATCATGAAAGCCGATGAAGATGTTCGTATGATCTCTGCTGAAGCACCAATCCTTTTCGCCAAAGCATGTGAACTTTTCATTCTTGAACTCACCATTCGTTCATGGCTTCATGCTGAAGAAAATAAACGAAGAACATTACAGAAAAATGACATTGCTGCTGCTATTACTCGTACTGATATTTTTGATTTTTTGGTTGATATTGTTCCGAGAGATGAGATTAAAGAAGAAGGTAATATTGTTGGTGTTGGTGCTACTGCTAGTGGTGTTCCTTATTATTATCCTCCTATTGGTCAACCTGCTGGTGGAATGATGATTGGTCGTCCGGCTGTTGATCCGGCTACCGGTGTTTATGTTCAGCCTCCTTCTCAGGCTTGGCAGTCTGTTTGGCAGACTGGTGCTGATGATGGTTCATATGCCGGTGGTAGCGGCGGTCAGCACAATGTTGATGGCCAGAGCAGCTGA 657 0.4368 MENNHNNQQQYPTPQPTAVTSAAPFQHLLQQQQQQLQMFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKEEGNIVGVGATASGVPYYYPPIGQPAGGMMIGRPAVDPATGVYVQPPSQAWQSVWQTGADDGSYAGGSGGQHNVDGQSS* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3326 218 Pfam Core histone H2A/H2B/H3/H4 5 120 IPR007125 GO:0003677
Tpr3g3326 218 Gene3D Histone, subunit A 22 135 IPR009072 GO:0046982
Tpr3g3326 218 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 2 217 - -
Tpr3g3326 218 SUPERFAMILY Histone-fold 5 129 IPR009072 GO:0046982
Tpr3g3326 218 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 2 217 - -
Tpr3g3326 218 MobiDBLite consensus disorder prediction 193 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3326 Tpr-Chr3 36672511 36675451 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3326 18 201 CCAAT-HAP5 Transcription Factor Family AT3G48590 83.684 5.51e-104 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Tpr3g3326 Histone 1.3e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3326 - - csv:101213576 330.487