Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3317 ATGGATTGGAATTTGAAAGCATCTTCTTGGGATTTGGGGGGTATAGAAGAAGCAACACTACCCAACATAGAAACAACAATAGAAGAACAAGAAGAAGAATCAAACAGATTTGGGAAATTTTCTGTTGATTTAAAGCTTGGTCAAGTTGAGAATTCTGTAACTGATCAATCATCATCTTCACCACTTCCTTTGTGCAAAGATGCTATTGTTGTTTCCAAAATGGCATCACCTTCTTCTTCTGGATCTTCTAAGAGAGCTAGAGCTATTAATAATACAACATTGTCAGTTTCTTGTCTTGTTGATGGTTGTAATTCTGATCTTAGTAATTGTAGAGATTATCATAGGCGTCATAAGGTTTGTGAACTTCATTCTAAGACTCCTGAGGTTACAATTGGTGGCCTTAAGCAAAGGTTCTGCCAACAGTGTAGCAGGTTCCATTCACTGGACCAATTTGATGAAAGAAAAAGAAGCTGTAGAAAACGTTTAGATGGACACAACCGAAGGAGAAGAAAACCTCAACCCGAACCTATCATGCGACCTGCTGGTAGTTTTTTGTCCAATTACCAAGGCACCCAATTGCTACCTTTTTCAAGTTCTACTACCATGGTGAATTCAGCTTGGAGTAGTAGCGGACTCATTACTTCCTGTGAAAGTGGTAGACTTCACATCCACAACAACCAACAAAACCAACAACTACATGTGGTTGATAAACAAGACCATTTTCTTGGTTCTACTGCAACAACCTATGGAGAAGGAAAACAACTTCAATTTTTACACAACGACAACACCAACAACAACAACAACAACAACACACCTTTTCTCAGGACAAGTAGCAAAATGTTTTGTGATAGCTTAACAACTTCTTCAGTACATGAATCTCCTCGTGCTCTCTCTCTTCTGTCATCATCACAGACACACACATCTCATTCAATGGCGCAGCAGCCTCATTCAATGTCTCTCATGCAGCCACCCTTAGGACTGAGTCTGCATGGTAACAACAACAACAACAACAGCTTTGAGTCAATGGATAGAGTTTTGGTTCCTAATGGGAATGAGAGTGATCATTGTTCCTCATTGTATAACATTGGTTCTGATGGATCTCAAAGCAATGATGCACCTCAACTATATCCCTATCAATGGGAATAG 1146 0.3944 MDWNLKASSWDLGGIEEATLPNIETTIEEQEEESNRFGKFSVDLKLGQVENSVTDQSSSSPLPLCKDAIVVSKMASPSSSGSSKRARAINNTTLSVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTIGGLKQRFCQQCSRFHSLDQFDERKRSCRKRLDGHNRRRRKPQPEPIMRPAGSFLSNYQGTQLLPFSSSTTMVNSAWSSSGLITSCESGRLHIHNNQQNQQLHVVDKQDHFLGSTATTYGEGKQLQFLHNDNTNNNNNNNTPFLRTSSKMFCDSLTTSSVHESPRALSLLSSSQTHTSHSMAQQPHSMSLMQPPLGLSLHGNNNNNNSFESMDRVLVPNGNESDHCSSLYNIGSDGSQSNDAPQLYPYQWE* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3317 381 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 7 381 - -
Tpr3g3317 381 Gene3D - 89 159 IPR036893 GO:0003677|GO:0005634
Tpr3g3317 381 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 7 381 IPR044817 GO:0003677
Tpr3g3317 381 MobiDBLite consensus disorder prediction 361 381 - -
Tpr3g3317 381 Pfam SBP domain 98 171 IPR004333 GO:0003677
Tpr3g3317 381 MobiDBLite consensus disorder prediction 159 181 - -
Tpr3g3317 381 SUPERFAMILY SBT domain 96 177 IPR036893 GO:0003677|GO:0005634
Tpr3g3317 381 ProSiteProfiles Zinc finger SBP-type profile. 95 172 IPR004333 GO:0003677
Tpr3g3317 381 MobiDBLite consensus disorder prediction 293 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3317 Tpr-Chr3 36608512 36612865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3317 1 381 SBP-box Gene Family AT5G50670 39.000 1.54e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tpr3g3317 SBP 3.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3317 - - gmx:100787407 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0684 3 6586421 6590827 Tpr3g3317 3 36608512 36612865 PCT