Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr3g3310 | ATGGCAGAGACCATCTGGAATGAAGATACAATATCTTGTTATGGCTGTGGTTTGACATTGCCATGCAAAACCATGAAGAAGGTTAAGGATTCAAGCTGTGCTCCTCAGTATTATTGTAAATCTTGTGCAAAGTTACTTAAATCGAAACAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGCTGGTGATTGGGTATGCTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGACAAAATTTCTAGCAAACTTTTGAAGGATCTGGAAAATATAGATTACTATTGCCCAGATTGCAAGGGAAAGTCGGATTGTAAATTATCAGCATCACAAACATACAAATCAATAAAGTATGTAGTAATTATCTATTGCTTCCTTTTCAAGTGCCTCATATCAGAGAAGGGAAGGTTGTGTATGTGGAAGACATAG | 438 | 0.3721 | MAETIWNEDTISCYGCGLTLPCKTMKKVKDSSCAPQYYCKSCAKLLKSKQYCGICKKIWHHSDAGDWVCCDGCNVWVHAECDKISSKLLKDLENIDYYCPDCKGKSDCKLSASQTYKSIKYVVIIYCFLFKCLISEKGRLCMWKT* | 146 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr3g3310 | 145 | PANTHER | HISTONE-LYSINE N-METHYLTRANSFERASE | 7 | 119 | - | - | |
Tpr3g3310 | 145 | SUPERFAMILY | FYVE/PHD zinc finger | 48 | 110 | IPR011011 | - | |
Tpr3g3310 | 145 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 46 | 106 | IPR013083 | - | |
Tpr3g3310 | 145 | SMART | PHD_3 | 51 | 103 | IPR001965 | - | |
Tpr3g3310 | 145 | PANTHER | PHD FINGER PROTEINS | 7 | 119 | - | - | |
Tpr3g3310 | 145 | Pfam | PHD-finger | 51 | 104 | IPR019787 | - | |
Tpr3g3310 | 145 | ProSiteProfiles | Zinc finger PHD-type profile. | 49 | 105 | IPR019787 | - | |
Tpr3g3310 | 145 | ProSitePatterns | Zinc finger PHD-type signature. | 39 | 102 | IPR019786 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr3g3310 | Tpr-Chr3 | 36504562 | 36507294 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr3g3310 | 7 | 76 | EF-hand Containing Proteins | AT5G28340 | 55.714 | 7.42e-21 | 85.5 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Tpr3g3310 | PHD | 1.1e-09 | CL0390 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr3g3310 | - | - | gmx:100785063 | 219.55 |