Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3310 ATGGCAGAGACCATCTGGAATGAAGATACAATATCTTGTTATGGCTGTGGTTTGACATTGCCATGCAAAACCATGAAGAAGGTTAAGGATTCAAGCTGTGCTCCTCAGTATTATTGTAAATCTTGTGCAAAGTTACTTAAATCGAAACAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGCTGGTGATTGGGTATGCTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGACAAAATTTCTAGCAAACTTTTGAAGGATCTGGAAAATATAGATTACTATTGCCCAGATTGCAAGGGAAAGTCGGATTGTAAATTATCAGCATCACAAACATACAAATCAATAAAGTATGTAGTAATTATCTATTGCTTCCTTTTCAAGTGCCTCATATCAGAGAAGGGAAGGTTGTGTATGTGGAAGACATAG 438 0.3721 MAETIWNEDTISCYGCGLTLPCKTMKKVKDSSCAPQYYCKSCAKLLKSKQYCGICKKIWHHSDAGDWVCCDGCNVWVHAECDKISSKLLKDLENIDYYCPDCKGKSDCKLSASQTYKSIKYVVIIYCFLFKCLISEKGRLCMWKT* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3310 145 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 7 119 - -
Tpr3g3310 145 SUPERFAMILY FYVE/PHD zinc finger 48 110 IPR011011 -
Tpr3g3310 145 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 106 IPR013083 -
Tpr3g3310 145 SMART PHD_3 51 103 IPR001965 -
Tpr3g3310 145 PANTHER PHD FINGER PROTEINS 7 119 - -
Tpr3g3310 145 Pfam PHD-finger 51 104 IPR019787 -
Tpr3g3310 145 ProSiteProfiles Zinc finger PHD-type profile. 49 105 IPR019787 -
Tpr3g3310 145 ProSitePatterns Zinc finger PHD-type signature. 39 102 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3310 Tpr-Chr3 36504562 36507294 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3310 7 76 EF-hand Containing Proteins AT5G28340 55.714 7.42e-21 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr3g3310 PHD 1.1e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3310 - - gmx:100785063 219.55