Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3308 ATGGCCTTCTTTGGCCGATTTACAAACCTGCTCAAGCATCAGTATGTACGAGGCATGTCATCAGCTCCCAACACAAAGCTGATGATAGGAGGTTTTTCGCGCTCTACTAATGAGCAAAGTTTGAGGGAAGCTTTTTCAAAATATGGAGAAATCACTGATGCAAGGATAACTATGAATCTTAAAACTGGTAAACGACGTGGCTTTATCACATACAATTCAGTTGAGGAGGCGTCAATTGCTCTTCAAGCATCGGATGGGCGGGACCTTCATGGTCGTCAGGTTCAAGTGAATTATGTTGATGTTAGGCCTCATGAAGGAAGGCCTACTGGGGTTTACAAACTCCCCGTCCCATCACCTCCTGCAGTCGATTTGGTCTCTGACCAAGGCAAGATTTAA 396 0.4495 MAFFGRFTNLLKHQYVRGMSSAPNTKLMIGGFSRSTNEQSLREAFSKYGEITDARITMNLKTGKRRGFITYNSVEEASIALQASDGRDLHGRQVQVNYVDVRPHEGRPTGVYKLPVPSPPAVDLVSDQGKI* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3308 131 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 13 106 - -
Tpr3g3308 131 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 101 IPR000504 GO:0003723
Tpr3g3308 131 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 13 106 - -
Tpr3g3308 131 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 94 IPR000504 GO:0003723
Tpr3g3308 131 SUPERFAMILY RNA-binding domain, RBD 19 105 IPR035979 GO:0003676
Tpr3g3308 131 SMART rrm1_1 26 97 IPR000504 GO:0003723
Tpr3g3308 131 Gene3D - 12 113 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3308 Tpr-Chr3 36478017 36479710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3308 25 87 Eukaryotic Initiation Factors Gene Family AT1G71770 32.812 1.90e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3308 K12741 - gmx:100782808 130.954