Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3294 ATGGAAAAGATGAAGTTTGTGAAAAATGGAGTAAGCAATAAATTGCCTCCTGGTTTTCGTTTTCAGCCAACAGACCAAGAGCTTGTCTTTCAGTACTTGAAATGTAAGACCTTCTCCTATGAGTTGCCTGCTTCAATCATTCCTGAAATCAATATCTGCAAGTATGATCCTTGGGAATTGCCAGGAAATCATGGTGAGCAAGATATGTATTTCTTCAGTGCTAAGGAAGCCAAGTATCGAAATGGCAATCGCATGAACAGATCAACCAACTCCGGCTATTGGAAGGCGACAGGATCAGATAAGAAAGTTAGTGTTTCTTCATCAATAAGTAATGGAGGAATTGCGGGGATAAGAAAAAGTCTTGTATTTTATAACAGAAAATCTCCCAATGGATCTCGAACTCATTGGATTATGCATGAATATCGCCTAGTTAGTGTAGAAACTACCGCTTGTAATCAGAGTTTCTATGAGATCGACATAGGGGATTGGGTTCTGTGTCGTATATTCATGAAGAAAAGAAGTAATAGAATGACGTTGAATACTAATGTTGACGAAGCTCAGCCAAAATTCTTTGATTTTATGATGGCACACAAATCATCAGCTCCGGACCCTACTACACATTTTTCTTCATCCTCATCTTGTTCGAGTTCCGGTGAAGTCTGTTCATCCGGAGAAAGATGCAGCTATATCGATTGA 696 0.3922 MEKMKFVKNGVSNKLPPGFRFQPTDQELVFQYLKCKTFSYELPASIIPEINICKYDPWELPGNHGEQDMYFFSAKEAKYRNGNRMNRSTNSGYWKATGSDKKVSVSSSISNGGIAGIRKSLVFYNRKSPNGSRTHWIMHEYRLVSVETTACNQSFYEIDIGDWVLCRIFMKKRSNRMTLNTNVDEAQPKFFDFMMAHKSSAPDPTTHFSSSSSCSSSGEVCSSGERCSYID* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3294 231 ProSiteProfiles NAC domain profile. 15 171 IPR003441 GO:0003677|GO:0006355
Tpr3g3294 231 Gene3D NAC domain 24 176 IPR036093 GO:0003677|GO:0006355
Tpr3g3294 231 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 228 - -
Tpr3g3294 231 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Tpr3g3294 231 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 228 - -
Tpr3g3294 231 SUPERFAMILY NAC domain 12 171 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3294 Tpr-Chr3 36271230 36272751 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3294 1 200 NAC Transcription Factor Family AT5G13180 48.673 9.03e-67 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr3g3294 NAM 5.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3294 - - aprc:113868555 282.722
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0706 3 6815542 6817264 Tpr3g3294 3 36271230 36272751 ECH
Tpr3g3294 3 36271230 36272751 Tpr3g3294 3 36271230 36272751 ECH