Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3289 ATGAAGGAATCAACAACAACAACAACAACAGACCCAATAACAACTTGCATCAACCTCACCAATTCACTCTTAAACCACGAAATCCCCACCGTCCATCACTTAAAATCCAAATGGTCAATCTTCAAACTCAAACTCACCACACTCCAAACTCATCTCACAGATTTCTCAACCGACTATTCCAACACCTCAACCACAAACCCCCTCTCTCTCCACCTACTCCAATCCATCACTCAAACCCTAAACGACGCCGTTTCACTCTCTCAACACTGTAAATCTCACTCCCCCGATTTACCCCTAGGTAAACTCCAAACTCAAAGCCAACTCGATTCTCTCATCGCCACTCTCCACCGCCACGTCACTGACTGCGATGTTCTGTTTCGTAGTGGCCTTCTCCTCGAAACTCCCGCTTTCTCTAAACGTGAAGCTGTTCGATCTCTTTCTAGAAACCTCATCGCACGGTTACAAATCGGGTCGTCTGATTCACGCGCTACCGCGATTGACTCGCTTTTATCACTTCTAAATGAAGATGATAAGAATGTTACTATAGCTGTTGCGCAGGGTGTAGTTCCGGTGCTGGTTAGGTTACTCGATTCGCCGTCGTCTTCTGATATGAAGGAGAAAATTGTTGCATCAATTTCTAGAGTCTCCGTGGTGGAAAGTGGAAAAAACAACCTACTCGCGGAGGGGTTGTTGTTGCTTAATCATTTGCTTAGGGTTTTGGATTCGGGAAGTGGTTTAGCTATAGAGAAAGCTTGTATTGCGCTTCAGGCGTTGAGTTTTACTAGAGATAATGCTAGAGCGATTGGATCTAGAGGTGGAATTTCGTCTCTCTTAGGGATTTGTCAAGGTGGGACGCCTGGTTCGCAAGCTTCTGCGGCCGCGGTTTTGAGGAATTTGGCAAAATTTAATGAAATTAGAGAGAATTTCGCGGAGGAGAATGCGGTTGTTGTTTTATTAGGGTTGGCTTCTTCTGGAACGGTGTTGGCGCAAGAGAATGCCATTGGTTGTGTGGCGAATTTGATTTCGGAGGATGATAGTATGAGGGTTTTGGCTTTTAAAGAAGGTGGAGTTGAGTGTTTGAAGAATTTCTGGGATTCGGCTCCTGTGATTCCAAGTCTTGAAGTTGGTGTTGAAATGTTGAGGTATTTGGCTATGACTGGTCCAATTGGTGAAGTTCTTGTTGCAGAAGGGTTTGTTGGGAGGGTAATGGGAGTGTTGAATTGTGATGTTTTAACGGTGAGGATTGCAGCTGCGCGAGCGGTTTATGCTATGGGTTTGAATGGTGGTAGCAAAACGAAAAAGGAAATGGGGGAATGTGGGTGTGTTCCTTTTTTGATTAAGATGTTGGACGGGAAAGGTGCCGAGGAGAAAGAGTCTGCTGCAATGGCATTGTCGGTGTTACTGCAACATCCTTTCAATAGAAGGATTTTTCGTAAGGACGATAAGGGAATAGTTAGTGCAGTTCATCTGTTGAACCCTTCTTTGGTTAATTTGGATAAGAAATACCCTGTTTCGTTGTTGGTTTCGCTTTTGCATTCTAAGACTTGTCGGAAACAAATGGTGGCTGTGGGGGCTTGTGTATATACGCAGAAGCTTGTTGAATTGGACGTTCCAGGTTCAAAAAAATTGTTAGACGGACTTGGTCGTGGTAAGATATGGGGAGTTTTTGCAAGACCCTAA 1680 0.4452 MKESTTTTTTDPITTCINLTNSLLNHEIPTVHHLKSKWSIFKLKLTTLQTHLTDFSTDYSNTSTTNPLSLHLLQSITQTLNDAVSLSQHCKSHSPDLPLGKLQTQSQLDSLIATLHRHVTDCDVLFRSGLLLETPAFSKREAVRSLSRNLIARLQIGSSDSRATAIDSLLSLLNEDDKNVTIAVAQGVVPVLVRLLDSPSSSDMKEKIVASISRVSVVESGKNNLLAEGLLLLNHLLRVLDSGSGLAIEKACIALQALSFTRDNARAIGSRGGISSLLGICQGGTPGSQASAAAVLRNLAKFNEIRENFAEENAVVVLLGLASSGTVLAQENAIGCVANLISEDDSMRVLAFKEGGVECLKNFWDSAPVIPSLEVGVEMLRYLAMTGPIGEVLVAEGFVGRVMGVLNCDVLTVRIAAARAVYAMGLNGGSKTKKEMGECGCVPFLIKMLDGKGAEEKESAAMALSVLLQHPFNRRIFRKDDKGIVSAVHLLNPSLVNLDKKYPVSLLVSLLHSKTCRKQMVAVGACVYTQKLVELDVPGSKKLLDGLGRGKIWGVFARP* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3289 559 PANTHER ARMADILLO-TYPE FOLD PROTEIN-RELATED 5 557 - -
Tpr3g3289 559 Gene3D - 138 234 IPR011989 -
Tpr3g3289 559 SUPERFAMILY ARM repeat 149 497 IPR016024 -
Tpr3g3289 559 Gene3D - 235 536 IPR011989 -
Tpr3g3289 559 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 5 557 - -
Tpr3g3289 559 SMART arm_5 429 469 IPR000225 GO:0005515
Tpr3g3289 559 SMART arm_5 302 342 IPR000225 GO:0005515
Tpr3g3289 559 SMART arm_5 176 217 IPR000225 GO:0005515
Tpr3g3289 559 SMART arm_5 261 301 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3289 Tpr-Chr3 36234103 36236257 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3289 148 302 U-box Gene Family AT1G71020 30.968 5.31e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3289 - - pvu:PHAVU_009G163700g 745.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3289 3 36234103 36236257 Tpr3g3289 3 36234103 36236257 ECH