Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3278 ATGATTTCCAGAATGAACAGTAACAATGGTTGGGTAGAAGAAAGAGAAGATGAAAACACTACAAACCCTAACACTCCTTCATCTGCTTCACCTTTCATCTCTAACAACTCACAAGATTTCTCTGCTTTCATCAAACCCATGCTTCAAATCAATGATGAAGATGCTGAATGGTACATCAGAGACATGGCTTTTTCTCCTAACTTAGACAACGTTTTACTCCAAACTGTTGATTCTGTTTCTTCATCTTCATGTTCACCTTCTTCTTCTGTTTTCAACTCACTTGATCCTTCAGCACCTTCACCATCAAATCTTCAGTATTTTCTTCCTCCAAATCCTAAACCCATTAACACTAACACCTTTTCTTCTCTTCTCAACAACAACCCTTTTGAAATTCCATGTGAACTTGGTGGTTTTCTTGATCATCAAGTTTCAATGTTACCTGGTTGTTCTTCATTTATGGGTAGTTTTGATTTCACTTCAAAAAATCAGTTACCAGCTACTAGTGCTACTAATCAGTTGAGCTTACCCCAATTGCCTCAAATCAACAATGGCTTCAATGGCTTCATGGGGTTTCAGAACTCTCAAGAGGGTTCTGGAAAGTCACTGTTTTTGAACAGGTCTAAGATTTTGAGACCTCTTGATTCTTTACCTTCTTCTGGAACACAACCGACTCTGTTTCAGAAAAGAGCAGCACTGAGAAAAAACTTGGGAAAGTGTGAAATGGGTGGAGGGAATGATAAGAAAAGGAAGATGAGTGGTGGAGATGAATTTGATGATTTGAGTTTTGACGGGTCTGGTTTGAACTATGATTCTGATGATTTGACTGAGAGTAACAATTTTGGTAAGATGGAAGAGATTGATGGCAAAAACTGTGGAAATGGTTCTAATGGTAATAGTACTGTAACTGGTGGTGTTGATCAGAAAGGGAAGAAGAAAGGAATCCCTGCTAAGAATTTGATGGCGGAACGTCGTCGCCGGAAGAAGCTCAATGATAGACTCTATATGCTGAGGTCTGTTGTTCCAAAGATTAGCAAAATGGATAGGGCTTCAATTCTTGGGGATGCAATTGAGTATCTGAAGGAACTTTTGCAAAGGATCAATGACCTTCATAACGAGTTGGAATCAACACCTGCTGGATCTTCACTAACACCTGTTTCAAGCTTCCATCCTTTGACACCGACTCCATCTTCGTTGCCAAGTCGTATCAAAGAAGAACTATGCCCCAGCTCATTGCCAAGCCCCAATGGCCAACCTGCCACCCAACCTGCCAGGATCGAGGTTCGGTTGCGGGAAGGAAGGGCTGTGAATATCCACATGTTTTGTCCTCGCAAACCTGGTCTTTTGCTGTCAACCATGAAGGCTTTGGATAACCTTGGATTAGACATTCAGCAAGCTGTTATAAGCTGTTTCAATGGATTTGCTATGGATATATTTAGAGCCGAGCAATGCAAAGAAGGTCAAGATGTCCTTCCAGAGCAAATCAAAGCAGTACTCTTGGATTTAGCTGGCTTAATGGAATGGCCTAATTAA 1530 0.4085 MISRMNSNNGWVEEREDENTTNPNTPSSASPFISNNSQDFSAFIKPMLQINDEDAEWYIRDMAFSPNLDNVLLQTVDSVSSSSCSPSSSVFNSLDPSAPSPSNLQYFLPPNPKPINTNTFSSLLNNNPFEIPCELGGFLDHQVSMLPGCSSFMGSFDFTSKNQLPATSATNQLSLPQLPQINNGFNGFMGFQNSQEGSGKSLFLNRSKILRPLDSLPSSGTQPTLFQKRAALRKNLGKCEMGGGNDKKRKMSGGDEFDDLSFDGSGLNYDSDDLTESNNFGKMEEIDGKNCGNGSNGNSTVTGGVDQKGKKKGIPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPAGSSLTPVSSFHPLTPTPSSLPSRIKEELCPSSLPSPNGQPATQPARIEVRLREGRAVNIHMFCPRKPGLLLSTMKALDNLGLDIQQAVISCFNGFAMDIFRAEQCKEGQDVLPEQIKAVLLDLAGLMEWPN* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3278 509 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 316 381 IPR036638 GO:0046983
Tpr3g3278 509 PANTHER BHLH TRANSCRIPTIONAL FACTOR 94 504 - -
Tpr3g3278 509 Gene3D - 307 377 IPR036638 GO:0046983
Tpr3g3278 509 CDD ACT_UUR-ACR-like 437 497 - -
Tpr3g3278 509 SMART finulus 319 368 IPR011598 GO:0046983
Tpr3g3278 509 Pfam Helix-loop-helix DNA-binding domain 320 362 IPR011598 GO:0046983
Tpr3g3278 509 MobiDBLite consensus disorder prediction 1 32 - -
Tpr3g3278 509 Coils Coil 352 376 - -
Tpr3g3278 509 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 94 504 - -
Tpr3g3278 509 CDD bHLH_AtAMS_like 316 381 - -
Tpr3g3278 509 MobiDBLite consensus disorder prediction 292 313 - -
Tpr3g3278 509 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 313 362 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3278 Tpr-Chr3 36051995 36055225 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3278 36 481 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 50.636 1.26e-115 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr3g3278 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3278 - - vra:106778861 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3278 3 36051995 36055225 Tpr3g3278 3 36051995 36055225 ECH