Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3277 ATGAATTTTACAAAACTCAACGACTCTCCCATGTTTCGTCAACAGCTTCAGAGTTTGGAAGAAAGTGCAGAATCGTTACGTTCCAGATGTTGGAAGTTCTACAAAGGATGTAGAAAGTACACGGAAGGGCTAGGAGAGGCATATGATGGAGACATTGGATTTGCAACTGCACTTGAAAGTTTTGGAGGAGGCCATAGTGACCCTCTTTTTGTAACTTTGGGAGGACCTGTAATGACCAAATTCTCTATTGCTTTGAGAGAAATCAGTACACACAAGGAACTTCTTCGGTCGCAGATCGAGCATATGCTGAATGACCGGTTAATGAACATCCTAAATGTCGAAATCGTTGATGTCAAGGAAGCTCGGAAGCGTTTTGATAAAGCTTCCCAATTATATGATCAGGCACGTGAGAAGTTTATGTCATTGAGAAAAAGTACCAAGTTTGATGTTGCAGCTGTTATAGAAGAGGAATTGCACAATGCAAGAACAATATTCGAGGAAGCTCGTTTCAATCTGGTTGGTGCTCTTCATAATATTGAGGCAAAGAAGAGATTTGAATTTTTGGAGGCTGTCACTGGAGTTATGGATGCTCATCTTCGATACTTTCAACAGGGATATCAGCAGTTACAAGAGCTGGAGCCTTTCATTATTGAGGTTTTGGCTTATGCACAAAAGGCAAGAGAAAGTTACAATGAGGAGCAGATTTCTCTTTGTGAAAGAATGGTAGAGTACAAAAAACTAAGTTACCAAGAAAGTAGGTTGTCCTTGAATGGCCCTTATGGTTCTCCCAGTGCAGAGAATGCGCATACGCATCCTTTTTCTAGGATATCAAGTAGTGTGCTAGATGCAGTAGCTGAATCAGCTGCAAATGGAAAGGTTCGAGTCATTCGACAAGGGTATCTTTCAAAACGTTCCTCGAATTTGAGGGCCGACTGGAAGAGAAGATTTTTTGTTCTTGATAGTCTCGGAACGCTTTACTACTATCGTAAACCATTACAAGTAAATAGTCATAATCAGCAATGTACACAGAGAAATTGTGCCAATGAAAACAGTGCTGGCATTTTGAGTAGGTTGCTTTCTTCGCAATACCATGCAGCTGTTCCTGATGAAAAATCTGTAGCACGTCACACGGTGAACCTGCTCACAGCAACAATCAAGGTTGATGCTGAGCAATCAGATTTAAGGTTCTGCTTCAGGATTATTTCGCCCTCAAAGATGTATACTTTGCAGGCAGAAAATGCCCTTGACCAGATGGATTGGATGGAAAAAATAAACGGAGTCATTGCATCCTTATTGTCTGTACAGACACTAGGTGTAAAGTATAAATCAGCTGACGCAGAAAGCTATGACAGCGACTCTTCCAACAACACCGACACATTACAAAGTTTACAAGACCATGATCAATTAGGGAGTGGAGAATTTGCACCCAAGAACTCCGCCATTCGTAAATCATTTGAAAAATCATCTGAAGACTTGCAGAAGAATAAGCAGTGTGTAAGAGTTGAACAGCCAATTGATATTCTAAGAAAGGTTAGTGGGAATGATAAATGTGCCGATTGCGGTAAACCTGAACCAGATTGGGCATCCTTAAACCTTGGTATCCTTGTATGCATTGAATGTTCCGGCGTTCACCGTAATCTTGGTGTACATATATCAAAAGTAAGATCACTGAAACTTGATGTCAAAGTGTGGGATTCCTCCGTCTTAACTATGTTTCAGTCACTTGGAAATCTCTTTGCAAACTCGGTCTGGGAGGAGCTTTTACATGCCGCAACAAGTACTTCACAAACTGATGACACTCCTTACGGTTCATTCAAAGGCGATAAAAACAAGTTAGGTTATGCAAGAAAACCAGAACTTGATGATCCTATTGCACTAAAGGAAAGATTCATTCATGCAAAGTACGCGGAGAAAGTCTTTGTTCGACAGTTGCCGAAAAGCCACCACCTTCTTTCAGTGGCACAACAAGTGATGGAATGCATCTGTGCCAATGACAAGAAAGCAGTGTACCGGCACATTGTCAAATCAGATGTGGATATCAATTCTGTTAGTGGAGACATAATATCTGGCTATTTTTCTAATATGTCGTCTTCAAGTGATTCAAACAAATCTTCTACAAGTAAAACTCAGATAATGGAGGACATGCACGAAGGTTCTAGTGTGCTTCACTTGGCTTGCCTAACAAGCGATGCTGGAATGATAGAGCTTCTTCTACAGTATGGCGCAGATGTAAATGCTATTGATTCAAGAGGTAGGACACCGCTGCATTACTGCGTTTTGAGAGGAAAGACTGCAGCTGCCAAATTGTTTATTACAAGGGGAGCCAATCCACTTGCTGTAGATAACGAAGGCAACACTCCACTTATGCTTGCACCAGAACCCGGGGCTATTGGCAAAGACATTCTTGCTCTCTTAACAAGCAGATGA 2427 0.4133 MNFTKLNDSPMFRQQLQSLEESAESLRSRCWKFYKGCRKYTEGLGEAYDGDIGFATALESFGGGHSDPLFVTLGGPVMTKFSIALREISTHKELLRSQIEHMLNDRLMNILNVEIVDVKEARKRFDKASQLYDQAREKFMSLRKSTKFDVAAVIEEELHNARTIFEEARFNLVGALHNIEAKKRFEFLEAVTGVMDAHLRYFQQGYQQLQELEPFIIEVLAYAQKARESYNEEQISLCERMVEYKKLSYQESRLSLNGPYGSPSAENAHTHPFSRISSSVLDAVAESAANGKVRVIRQGYLSKRSSNLRADWKRRFFVLDSLGTLYYYRKPLQVNSHNQQCTQRNCANENSAGILSRLLSSQYHAAVPDEKSVARHTVNLLTATIKVDAEQSDLRFCFRIISPSKMYTLQAENALDQMDWMEKINGVIASLLSVQTLGVKYKSADAESYDSDSSNNTDTLQSLQDHDQLGSGEFAPKNSAIRKSFEKSSEDLQKNKQCVRVEQPIDILRKVSGNDKCADCGKPEPDWASLNLGILVCIECSGVHRNLGVHISKVRSLKLDVKVWDSSVLTMFQSLGNLFANSVWEELLHAATSTSQTDDTPYGSFKGDKNKLGYARKPELDDPIALKERFIHAKYAEKVFVRQLPKSHHLLSVAQQVMECICANDKKAVYRHIVKSDVDINSVSGDIISGYFSNMSSSSDSNKSSTSKTQIMEDMHEGSSVLHLACLTSDAGMIELLLQYGADVNAIDSRGRTPLHYCVLRGKTAAAKLFITRGANPLAVDNEGNTPLMLAPEPGAIGKDILALLTSR* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3277 808 ProSiteProfiles ARF GTPase-activating proteins domain profile. 502 648 IPR001164 GO:0005096
Tpr3g3277 808 CDD ArfGap 505 635 - -
Tpr3g3277 808 CDD BAR_SFC_plant 15 215 IPR035670 -
Tpr3g3277 808 SMART 5bar 2 218 IPR004148 GO:0005515|GO:0005737
Tpr3g3277 808 SMART ANK_2a 717 746 IPR002110 GO:0005515
Tpr3g3277 808 SMART ANK_2a 750 779 IPR002110 GO:0005515
Tpr3g3277 808 ProSiteProfiles Ankyrin repeat region circular profile. 717 748 - -
Tpr3g3277 808 SUPERFAMILY Ankyrin repeat 660 795 IPR036770 -
Tpr3g3277 808 Gene3D - 287 438 IPR011993 -
Tpr3g3277 808 SUPERFAMILY ArfGap/RecO-like zinc finger 501 643 IPR037278 -
Tpr3g3277 808 Pfam Putative GTPase activating protein for Arf 505 640 IPR001164 GO:0005096
Tpr3g3277 808 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 806 - -
Tpr3g3277 808 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Tpr3g3277 808 PANTHER CENTAURIN/ARF 1 806 IPR045258 GO:0005096
Tpr3g3277 808 PRINTS HIV Rev interacting protein signature 514 533 IPR001164 GO:0005096
Tpr3g3277 808 PRINTS HIV Rev interacting protein signature 533 550 IPR001164 GO:0005096
Tpr3g3277 808 PRINTS HIV Rev interacting protein signature 556 577 IPR001164 GO:0005096
Tpr3g3277 808 SUPERFAMILY BAR/IMD domain-like 6 317 IPR027267 -
Tpr3g3277 808 SMART PH_update 295 431 IPR001849 -
Tpr3g3277 808 Coils Coil 118 138 - -
Tpr3g3277 808 ProSiteProfiles PH domain profile. 294 429 IPR001849 -
Tpr3g3277 808 SUPERFAMILY PH domain-like 295 437 - -
Tpr3g3277 808 SMART arf_gap_3 502 648 IPR001164 GO:0005096
Tpr3g3277 808 CDD PH_ACAP 297 433 - -
Tpr3g3277 808 Gene3D Arf GTPase activating protein 482 646 IPR038508 -
Tpr3g3277 808 ProSiteProfiles Ankyrin repeat region circular profile. 750 782 - -
Tpr3g3277 808 ProSiteProfiles Ankyrin repeat profile. 750 782 IPR002110 GO:0005515
Tpr3g3277 808 Gene3D - 647 806 IPR036770 -
Tpr3g3277 808 Pfam PH domain 295 428 IPR001849 -
Tpr3g3277 808 ProSiteProfiles Ankyrin repeat profile. 717 749 IPR002110 GO:0005515
Tpr3g3277 808 Pfam BAR domain of APPL family 6 233 - -
Tpr3g3277 808 Pfam Ankyrin repeats (3 copies) 722 792 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3277 Tpr-Chr3 36044654 36051189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3277 490 655 C2H2 Transcription Factor Family AT3G07940 36.145 2.58e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3277 K12489 - gmx:100797073 1104.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3277 3 36044654 36051189 Tpr3g3277 3 36044654 36051189 ECH