Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3272 ATGCCTTTTGAAATAATGAACCAAAGGGGTGTTACTGCTTCATCCCATCTTTATGATGATGTTTCCTATGCTTCTGAGAGGAATGATGGATTACGGAAGTCGGAATCCATTCATGATGATCATCCACAAGGAAAGGGTGAAATTGCAGCTTCACCTGGAGGCATTTTGCATACTTCATCAACCCTCGAAAGAAATGCAAAAACAGGCTTGCCCATGTCACAGACTAGTCTATCTGGGGAAATTTCGGAAAACATACACTTTGGTGGACAAGCTGGCATTGTAGATGTGCTGAAGGATTCGAAGGAATCGTTGAATTATCATCCAAGATTATGGTCTGATGTGCATAGGCAGCCAACATCTAGCTCGTATGGTTTAATTGGGAACAAGATTTTCACCAATGCAAGCTCACGTGAAAGTAGTCTATTCTCAAGCTCGCTGTCGGATATGTTTAGCCAAAAGTTGAGGTTATTGGGAAACAATAATGTTGGTTTTCATCCTGAGGAAGAACCATACAAATCTCTTGAAGAAATTGAGGCTGACACTATAGGGGATCTCCTTCCTGACGAAGATGATTTGTTTTCCGGCGTCACCGATAATTTAGGAAGCAGTGCGCATGCCAAAACAACTGATGATTTTGAAGATTTTGATCTGTTCAGCAGTGGCGGAGGCATGGAGTTGGAAGGAGATGAACTTCTAGTTTCAGGGAAAAGAATCTGTGGCTTGGAATTGGATGGAGATTCTGCTTACTTTGGGGGTTCTAAAGGCAAAAGTCCTTTTGGTGAACAATCTTCTAGAACACTTTTTGTTAGAAATATTGCTAGTAATGAAGAAGACTCGGAGCTAAAGGCTCTATTTGAGCAATATGGAGATGTCCGAACCATTTATACTGCCGGAAAGCATCAAGGGTTTGTTATGGTTTCATATTATGACCTAAGGGCTGCACAAAATGCAATGAAAGCACTTCAAAATAGGTCATTGAATTCTAGGAATCTGGATATACATTATTCATTTCCAAAGGGAAATGCTTCAGAGAAGGATATTAGCCATGGTACACTGATGATATCTGGTCTTGATCCATCTGTTTTGAAAGACGAGCTAAAACATATTTTTGGGCTTTATGGAGAAATCAAAGAAATCTATGAATATCCAGAAATGAATCATATCAAATATATTGAATTTTATGATGTTCGAGGTGCAGAAGCTTCTCTCCGTTCATTGAATGGGATCTGCATTGCTGGGAAACACATCAAGCTTGAACCTGGCCATCCTAAGAATGCAACACGTATGATGAAGCCGTCTCAAAAGGGACAAGATGAACCTGATCTTGGTCATAATCTCAATGACATCTTGTTTTTAAGACAGAAGGGAGTGGCTACTGGAGTTATTGCATCTGGTGGAAGCTTGGAAAATGGATATAATCATAGATTCCAATCTGCATCACAGCTGCCTTTGAATGCTTTCATTGATAACACAATTTTTCACAGTATTTCCAACACCGCAAGAGGGGCATCTGCTGTAACAGTACCTGGTGCCCGTGAGTCCAGTAACGCTGTTGATGCAATGAAATTTGGATCTATTCCAAGATTCCATCCTCATTCTTTGCCTGAGTATCATGATGGTTTAGCTAATGGTAGTCCTTACAATTTGTCAAATACCATTAAAATGGCTGCCAATATTGGAAATGGATCCACAGAAGCATCTGATAGAAGGCACATTCAGGGAATGAGCTCAACTGGGAACTTGGCAGAATTTAATGCAGGAGGAAATGGGAGTCTTCCTCACCATCTTTATCATATGTGGAATGGCTCAAACTTGCGTCAGCAATCTCCATCAAATGCTATGGTTTGGCAGAAAACACCATCCTTTGTTAATGGTGCTGGTTCTCCAGGTCTTCCACTGATGCCCAGCTTTCCCAGGTCACCGGCTCATGTGCTGAGAGCATCACATATAGACCACCATGTTGGATCAGCACCAGTTGTTACAGGATCACCCTGGGAAAGACAACATTCTTACTTGGGAGAGTCTCCTGATGCTCCTGGTTTTAGACTGGGTTCTCTAGGAAATGCAGGTTTTCATGGTAGCTGGCAATTGCATCCTTCAGATCTTTCTAGCAACATGTTTTCTCATGTTGGTGGGAATGGTAATGATTTGACATCCAGTGTTGGGCAGGGCTCTCCTAAGCAGTTGTCACATGTCTTCCCTGGGAGACTTCCCATGACTTCAATGTCAAAATTTGATTCTACCAATGATCGGATGAGAAACCTCTATCATCGTCGAAGTGAAGCAAACAATAACAATGCTGATAAAAAGCAATATGAACTCGACCTAGGCCGCATATTGCGTGGGGAAGACAACCGAACAACACTTATGATCAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTACAGCCATAGATGAGAGTTGTCGGGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGAACAAATGTAATGTCGGCTATGCATTCATCAATATGACTGATCCTGGTCAAATAATTCCATTCCACCAGGCTTTTCATGGAAAAAAATGGGAGAAGTTTAACAGTGAAAAGGTAGCCGTACTTGCATATGCTCGAATTCAAGGAAAATCTGCTCTTATTGCTCATTTCCAGAATTCAAGTCTGATGAACGAAGATAAACGTTGCCGCCCTATTCTATTCCATACAGATGGTCCAAATGCTGGTGATCCGGAGCCTTTCCCCTTGGGCGCCAATGTTAGAGTAAGGCCGGGAAAATTACGTAATTGTGGCAGCGAGGAGAGCCGTATTCAAGGGAATTCTTCAACTTTGGCAAGTGCAGAGGAGTTTGCTAGTGGAATACATTCTTCACCAAGTTCTTCAAGAGACACTGACTGA 2889 0.4154 MPFEIMNQRGVTASSHLYDDVSYASERNDGLRKSESIHDDHPQGKGEIAASPGGILHTSSTLERNAKTGLPMSQTSLSGEISENIHFGGQAGIVDVLKDSKESLNYHPRLWSDVHRQPTSSSYGLIGNKIFTNASSRESSLFSSSLSDMFSQKLRLLGNNNVGFHPEEEPYKSLEEIEADTIGDLLPDEDDLFSGVTDNLGSSAHAKTTDDFEDFDLFSSGGGMELEGDELLVSGKRICGLELDGDSAYFGGSKGKSPFGEQSSRTLFVRNIASNEEDSELKALFEQYGDVRTIYTAGKHQGFVMVSYYDLRAAQNAMKALQNRSLNSRNLDIHYSFPKGNASEKDISHGTLMISGLDPSVLKDELKHIFGLYGEIKEIYEYPEMNHIKYIEFYDVRGAEASLRSLNGICIAGKHIKLEPGHPKNATRMMKPSQKGQDEPDLGHNLNDILFLRQKGVATGVIASGGSLENGYNHRFQSASQLPLNAFIDNTIFHSISNTARGASAVTVPGARESSNAVDAMKFGSIPRFHPHSLPEYHDGLANGSPYNLSNTIKMAANIGNGSTEASDRRHIQGMSSTGNLAEFNAGGNGSLPHHLYHMWNGSNLRQQSPSNAMVWQKTPSFVNGAGSPGLPLMPSFPRSPAHVLRASHIDHHVGSAPVVTGSPWERQHSYLGESPDAPGFRLGSLGNAGFHGSWQLHPSDLSSNMFSHVGGNGNDLTSSVGQGSPKQLSHVFPGRLPMTSMSKFDSTNDRMRNLYHRRSEANNNNADKKQYELDLGRILRGEDNRTTLMIKNIPNKYTSKMLLTAIDESCRGTYDFLYLPIDFKNKCNVGYAFINMTDPGQIIPFHQAFHGKKWEKFNSEKVAVLAYARIQGKSALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGANVRVRPGKLRNCGSEESRIQGNSSTLASAEEFASGIHSSPSSSRDTD* 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3272 962 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 962 - -
Tpr3g3272 962 SUPERFAMILY RNA-binding domain, RBD 788 873 IPR035979 GO:0003676
Tpr3g3272 962 Gene3D - 245 347 IPR012677 -
Tpr3g3272 962 CDD RRM1_MEI2_like 264 339 IPR034453 -
Tpr3g3272 962 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 350 423 IPR000504 GO:0003723
Tpr3g3272 962 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 962 - -
Tpr3g3272 962 Gene3D - 780 872 IPR012677 -
Tpr3g3272 962 SUPERFAMILY RNA-binding domain, RBD 262 425 IPR035979 GO:0003676
Tpr3g3272 962 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 265 338 IPR000504 GO:0003723
Tpr3g3272 962 CDD RRM3_MEI2_like 789 874 IPR034454 -
Tpr3g3272 962 MobiDBLite consensus disorder prediction 930 962 - -
Tpr3g3272 962 MobiDBLite consensus disorder prediction 927 962 - -
Tpr3g3272 962 Pfam RNA recognition motif 2 786 882 IPR007201 -
Tpr3g3272 962 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 352 417 IPR000504 GO:0003723
Tpr3g3272 962 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 267 331 IPR000504 GO:0003723
Tpr3g3272 962 Gene3D - 348 441 IPR012677 -
Tpr3g3272 962 SMART rrm1_1 351 419 IPR000504 GO:0003723
Tpr3g3272 962 SMART rrm1_1 788 866 IPR000504 GO:0003723
Tpr3g3272 962 SMART rrm1_1 266 334 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3272 Tpr-Chr3 36000922 36008821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3272 260 440 Eukaryotic Initiation Factors Gene Family AT3G16380 24.752 7.17e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3272 - - gmx:100797616 1450.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0726 3 6988574 6996213 Tpr3g3272 3 36000922 36008821 ECH
Tpr3g3272 3 36000922 36008821 Tpr3g3272 3 36000922 36008821 ECH