Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3268 ATGGATAAGAGGAGAGAATCATGGGAAGAAGAAGGAAAAGAAGATGAGAATTTGTTTCCAGTTTTTTCTGAAAGATCACAGCAAGATATGTCAGCTATAGTATCAGCACTTACACAAGTCATGGGCGGCAACAATAACAACAGTGAAATGCATGAAGCTTCTTCAATTCATAATATTACTCAACAATCTCAACTACCACAACAAGATCAAGGGAATGTAAGAAGAAGACACTATAGAGGTGTGAGGCAGAGACCATGGGGAAAATGGGCTGCAGAGATTCGCGATCCGAAGAAAGCAGCAAGGGTATGGCTAGGAACCTTTGAAACTGCTGAAGCTGCAGCTATTGCCTATGATGAAGCTGCACTCAGATTCAAAGGAAGCAAAGCTAAGCTCAATTTTCCTGAAAGAGTTCAAAGTTCAGCAGAATTTGGATATAACCAACAATTTCATCACATAGCTTCAAACACAAGTAACATGCAACAATCTAACCAACAAGTTCCTCTTCCACACTTTTCTCAAGAAACATATTCAAATCCTTATCAATATGCTGCACAAGCACAACTTCAGGCTAGTGGAAGTAGTAACTTCAATCAGGATATGCTTGGTTTCTATGGGAGAGATATGTTTGTTTCTAATTCTCAGCCTTTAATATCAAATTCATCTTCGTCTTCATCCTCGTCTTCTGGATTATCTCAGCAACAACAAGAGTTTTTGAGATTGTCGATGCAATTCGGCGGTTCTTCTTCCTCTTCTTCCGCTTATGAGCCTCCGAGGAATTGGGGGGATGGAACGGATGGGAATCAATGA 807 0.4027 MDKRRESWEEEGKEDENLFPVFSERSQQDMSAIVSALTQVMGGNNNNSEMHEASSIHNITQQSQLPQQDQGNVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEAAAIAYDEAALRFKGSKAKLNFPERVQSSAEFGYNQQFHHIASNTSNMQQSNQQVPLPHFSQETYSNPYQYAAQAQLQASGSSNFNQDMLGFYGRDMFVSNSQPLISNSSSSSSSSSGLSQQQQEFLRLSMQFGGSSSSSSAYEPPRNWGDGTDGNQ* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3268 268 MobiDBLite consensus disorder prediction 42 79 - -
Tpr3g3268 268 MobiDBLite consensus disorder prediction 1 20 - -
Tpr3g3268 268 ProSiteProfiles AP2/ERF domain profile. 77 134 IPR001471 GO:0003700|GO:0006355
Tpr3g3268 268 Pfam AP2 domain 77 126 IPR001471 GO:0003700|GO:0006355
Tpr3g3268 268 PANTHER DNA-BINDING DOMAIN 23 247 IPR044808 GO:0003700|GO:0009873
Tpr3g3268 268 CDD AP2 77 135 IPR001471 GO:0003700|GO:0006355
Tpr3g3268 268 SUPERFAMILY DNA-binding domain 77 135 IPR016177 GO:0003677
Tpr3g3268 268 Gene3D AP2/ERF domain 76 136 IPR036955 GO:0003700|GO:0006355
Tpr3g3268 268 SMART rav1_2 77 140 IPR001471 GO:0003700|GO:0006355
Tpr3g3268 268 MobiDBLite consensus disorder prediction 241 268 - -
Tpr3g3268 268 MobiDBLite consensus disorder prediction 1 21 - -
Tpr3g3268 268 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Tpr3g3268 268 PRINTS Ethylene responsive element binding protein signature 100 116 IPR001471 GO:0003700|GO:0006355
Tpr3g3268 268 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 23 247 - -
Tpr3g3268 268 MobiDBLite consensus disorder prediction 42 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3268 Tpr-Chr3 35967988 35970459 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3268 17 138 AP2-EREBP Transcription Factor Family AT5G61890 70.229 9.07e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr3g3268 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3268 - - gmx:100787091 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3268 3 35967988 35970459 Tpr3g3268 3 35967988 35970459 ECH