Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3239 ATGAAGGCAATCCAGGAAGAGTTGGAAGATGTTATACCAGCCATAGAGAGTTTATATCATCTTGGCTCAAAAATAGTTAAAACAATTCCCATTCAACTCACAGATGAAGAAAAAGGATTTTACTTAATAGCTGAACATCGTGTTAAAGAGAAACTAAGGGATATGAAACTTAGTAGCCAACCACTTGAGGAAGAAAGAGTAAAGAAACAACTATTTCTCGATCTAGAACTATGCATCCTAAGGCTTCGAGAAATGCTTTCAAGCATACCATTAGCCGTGAAAAAAGGCGATATACAAGGAAATTCTGAACTCAAGGAGAAGATAAATACTAAGCTTAAAGAAAAGGAAGCAGCATGTCCCATCTGTTACTCTGAGTTGAAGTTTTTTCCTGTAGTATTCATCGCCAAAGAATGCAAACATATCTTTTGTCAACCGTGTATGGAAATTTTTTGTCTTAAAGATAAAAAGTGTGCTCTATGTCGGGATGAGCTACATGATGATGATAGTGTTTTTTCATCACCTTTCAACTGTCCTGATAGCACAAAAGCAGATGTAATGCTTAATAGCTTAGAAAGTAAGTCACTGGTTATTTCAAAGTTTGATCGCTTGTTAACCTGGCTTGAAAGTTTTTTAAAAGACAAAGGGTTTGAAGTTCATAGAATCCATGGGAAGATGGAGGCTGAAGAGATATTAGAGATAGCTCAAATGTTTCAAAACTCTTCGAGTGAGAAAAATAGGGTTTTATTAGCAAGTTTCGAAGCTATTTCAGTGAAAGAAAATGAGGAAAATGCTGTTATAAGTCACATCACAGGAGTTAAAGGAAAAATAAATGAAAAATTTCATGGAGCTTTTAGATTGGTGGTTGAAGATGCAATTGAAGGAAAAATTGTTGGATTGAAAGGGACGGTAGAAGCTGGATTCAAAGAACTTAACATGCTAGAAATAGAAAAAAATTTAACATGA 963 0.3479 MKAIQEELEDVIPAIESLYHLGSKIVKTIPIQLTDEEKGFYLIAEHRVKEKLRDMKLSSQPLEEERVKKQLFLDLELCILRLREMLSSIPLAVKKGDIQGNSELKEKINTKLKEKEAACPICYSELKFFPVVFIAKECKHIFCQPCMEIFCLKDKKCALCRDELHDDDSVFSSPFNCPDSTKADVMLNSLESKSLVISKFDRLLTWLESFLKDKGFEVHRIHGKMEAEEILEIAQMFQNSSSEKNRVLLASFEAISVKENEENAVISHITGVKGKINEKFHGAFRLVVEDAIEGKIVGLKGTVEAGFKELNMLEIEKNLT* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3239 320 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Tpr3g3239 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 174 IPR013083 -
Tpr3g3239 320 Gene3D - 175 266 IPR027417 -
Tpr3g3239 320 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 20 260 - -
Tpr3g3239 320 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 251 IPR027417 -
Tpr3g3239 320 ProSitePatterns Zinc finger RING-type signature. 138 147 IPR017907 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3239 16 254 RAD5 or RAD16-like Gene Family AT5G05130 29.259 5.14e-19 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3239 K15711 - aof:109849378 91.6633