Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3234 ATGGGTAGATCTCCTTGTTGTGAGAAAGAGCACACAAACAAAGGTGCTTGGACAAAAGAAGAAGATGAACGTCTCATTAACTATATCAAGCTTCATGGGGAAGGTTGTTGGAGATCTCTTCCAAAAGCTGCTGGCTTGCTAAGATGTGGCAAGAGTTGCAGACTCAGATGGATAAATTACCTCAGACCTGATCTCAAGAGGGGAAACTTCACTGAACAAGAAGATGATCTTATTATCAACCTCCACACCTTACTTGGAAACAAATGGTCTCTAATAGCTGCGAAATTACCGGGAAGAACAGATAATGAAATCAAGAATTATTGGAACACTCACATCAAACGAAAACTCTACAGCCGTGGAGTCGATCCTCAAACTCATCGACCACTTAAAGACTCAACAGCATCCACCACCACAGTTCCACCTCCTAATACATCAGTTTTACAATCTCAAATCACCACAAGCAATAAGAACACAATCATCAACGATATTAGTAATGGCAGTTTTCAGTTAGTTGGTGGTTATGACAATACAAAGATTAATGTAACCAAATTGGTTTCTGAAGATTCAAATTCAAATAGTAGTAGCGCGGTTAGCTCCGAGGAAACATATCAATATCATCATCAACAACTCAACTTGGACCTTTCGATTGGTCTTCCTTCATCGACGTCACATACTCAAATAAACACAGACAAATTGAAAATAGAACAACTACAAGGTGATGAGCAACAAGAAACAAAGGTTGTTACAACTAGTCATGGTTTGTGTCTTTGTTACAATTTAGGGTTTCAAAGCAACCAAGTGTGTTGTTGCAACAAAACCATAGGTAATAGTATTACTACAACTGTTGCTGATAATAATATGTATAGATTTTATAGACCCATGGATATTTAG 891 0.3793 MGRSPCCEKEHTNKGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEQEDDLIINLHTLLGNKWSLIAAKLPGRTDNEIKNYWNTHIKRKLYSRGVDPQTHRPLKDSTASTTTVPPPNTSVLQSQITTSNKNTIINDISNGSFQLVGGYDNTKINVTKLVSEDSNSNSSSAVSSEETYQYHHQQLNLDLSIGLPSSTSHTQINTDKLKIEQLQGDEQQETKVVTTSHGLCLCYNLGFQSNQVCCCNKTIGNSITTTVADNNMYRFYRPMDI* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3234 296 CDD SANT 69 112 IPR001005 -
Tpr3g3234 296 Gene3D - 14 66 - -
Tpr3g3234 296 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 265 - -
Tpr3g3234 296 CDD SANT 16 61 IPR001005 -
Tpr3g3234 296 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tpr3g3234 296 MobiDBLite consensus disorder prediction 119 145 - -
Tpr3g3234 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tpr3g3234 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tpr3g3234 296 Gene3D - 69 116 - -
Tpr3g3234 296 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tpr3g3234 296 SMART sant 66 114 IPR001005 -
Tpr3g3234 296 SMART sant 13 63 IPR001005 -
Tpr3g3234 296 MobiDBLite consensus disorder prediction 128 145 - -
Tpr3g3234 296 PANTHER TRANSCRIPTION FACTOR MYB7 1 265 - -
Tpr3g3234 296 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Tpr3g3234 296 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr3g3234 296 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3234 Tpr-Chr3 35616500 35618776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3234 1 226 MYB Transcription Factor Family AT4G38620 59.292 2.14e-90 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr3g3234 Myb_DNA-binding 4.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3234 K09422 - gmx:100808083 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3234 3 35616500 35618776 Tpr3g3234 3 35616500 35618776 ECH
Tpr3g0753 3 7192687 7194320 Tpr3g3234 3 35616500 35618776 PCT