Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3214 ATGATGCAGGAAGACAAGAAAATGAAAGTGAAGAAAGGATGGCTTGCAGTTCAAGTGGGTTTAGAGGAAGAAGAAGAAGGTGGTTCTGCATCTCAAAAATTTGTCATACCAATTTCTTATCTTTACCATCCACTTTTCAAGAATCTTCTTGACCAAGCTTATGATGTTTATGGTTACCACACTAATGGTCCTCTCAAACTTCCTTGTTCTGTTGATGATTTCCTTCATCTTCGTTGGCGAATCGAGAAAGAATCAGGTCCTAATCAACATAACCATAATCATCATCAGTATCGTCTTCCTCATGCTCTGATTTTTCACTCTTGTTGA 327 0.3792 MMQEDKKMKVKKGWLAVQVGLEEEEEGGSASQKFVIPISYLYHPLFKNLLDQAYDVYGYHTNGPLKLPCSVDDFLHLRWRIEKESGPNQHNHNHHQYRLPHALIFHSC* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3214 108 Pfam Auxin responsive protein 6 80 IPR003676 GO:0009733
Tpr3g3214 108 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 8 95 IPR003676 GO:0009733
Tpr3g3214 108 PANTHER SMALL AUXIN-UP RNA-RELATED 8 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3214 Tpr-Chr3 35301976 35302681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3214 10 82 Calmodulin-binding Proteins AT3G43120 42.466 6.39e-12 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3214 K14488 - mtr:MTR_3g097120 206.838