Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3202 ATGCAGGGTGAATTAGAATTGCCACCTGGTTTCAGATTTCATCCAACTGATGAAGAATTGGTGAATCATTACTTGTGTAGGAAATGTGCTGGTCAATCAATTTCTGTTCCTGTTGTCAAAGAAGTTGATTTGTATAAGTTTGATCCATGGCAGCTTCCAGAAATGGGATACCAAAGTGAGAAAGAATGGTACTTTTTCTCTCCAAGGGATCGGAAATACCCGAATGGTTCACGGCCTAATCGGGCTGCTGGAAGTGGTTATTGGAAAGCTACCGGAGCTGATAAACCGATCGGGAAATTGAAACCGATGGGGATTAAAAAGGCACTGGTTTTCTACGCCGGTAAAGCACCGAAAGGAGTGAAAACTAATTGGATTATGCACGAATATCGTCTTGCTAATGTTGATCGATCCGCCGGAAAGAAAAACAACTTAAGGCTTGATGATTGGGTGTTATGTAGAATCTACAACAAAAAAGGGAAGATTGAGAAATTCAACACTAACAACACACCAAAGGTTCAAATTCAAAATTACTATGAGCATGAAGAAGAACAAGAACATGAGATGAAGCCAGAAATTAAGAAATTAGGAAACTACCACTACATGGATACATCAGATTCAGTTCCAAAGCTAAACACAGACTCAAGCAGTTCAGGTCACGTGGTTTCACCAGACATCACGTGTGACAGAGAGGTTCAAAGTGAACCAAAATGGAATGAATTTGGAATACAGCTGGATGACGCGTTTGATTTTCAGTTCAATTACTTGGAAAATGCACTTTCATTTGATTATGATGATGACCCTTTTGGAACCAATGATCAGTACCAAATCAACCAGCTTTCACCATTACAAGACATGTTCATGTTCCAACAAAAACCATTTTGA 882 0.3946 MQGELELPPGFRFHPTDEELVNHYLCRKCAGQSISVPVVKEVDLYKFDPWQLPEMGYQSEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKLKPMGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSAGKKNNLRLDDWVLCRIYNKKGKIEKFNTNNTPKVQIQNYYEHEEEQEHEMKPEIKKLGNYHYMDTSDSVPKLNTDSSSSGHVVSPDITCDREVQSEPKWNEFGIQLDDAFDFQFNYLENALSFDYDDDPFGTNDQYQINQLSPLQDMFMFQQKPF* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3202 293 Gene3D NAC domain 16 163 IPR036093 GO:0003677|GO:0006355
Tpr3g3202 293 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 5 264 - -
Tpr3g3202 293 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Tpr3g3202 293 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Tpr3g3202 293 PANTHER NAC TRANSCRIPTION FACTOR 56 5 264 - -
Tpr3g3202 293 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3202 Tpr-Chr3 35198690 35200573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3202 1 293 NAC Transcription Factor Family AT1G01720 62.081 1.53e-124 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr3g3202 NAM 1.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3202 - - gmx:100779770 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3202 3 35198690 35200573 Tpr3g3202 3 35198690 35200573 ECH
Tpr3g0788 3 7491440 7493847 Tpr3g3202 3 35198690 35200573 ECH