Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3172 ATGAACAAAAACAACTCACGGAAGCGTTCGGCGCCACCGCCGCAACCACCACCACCAAAGACAAAGCAGGCACTGTCCCTGGAAGAAGAATTCGTTGACGAAGATGTGTTCATCGACGAAACCCTACTTTCTGAAGACGAAGAATCCGCAATCCTCCGTGACATTGAACAACGCCAAGCCCTAGCTGCTCGTCTCGCAAAGTGGACTCGTCCTCCTCTCTCCCAAGAATATCTCTCTCAATCTCGTAGCATTCTTTTTCAGCAACTCGAGATTGATTACGTGATTGGAGAGAGTGATAGAGAATTGTTACCAAACAGGTCTGGACCTGCTGCTATAATCAGAATATTTGGAGTAACCAAAGAAGGACACAGTGTTTGCTGCAAGGTTCATGGGTTTGAACCATATTTCTACATCAGCTGCCCTCCTGGAATGAGACCAGATGATATCTCCCGTTTCCATCAAGTTCTCGAGGCACGGATGAGAGAAGCCAACAGAAACAGCAATGTAAGGAATCTTGTTATTGATGTTCAAATGGTGCAGAGAAGGAGCATTATGTACTATCAACAATTAGAGTCCCAACCCTTTCTCAAAATTATTGTTGCACTCCCAACAATGGTTGCTAGCTGCCGTGGTATACTTGATAGAGGTATTCAGCTTGATGGTCTTGGCATGAAAAGCTTCATGACTTATGAAAGCAATGTACTTTTTGCTCTTCGTTTCATGATTGATTGCAACATAGTTGGCGGAAATTGGATTGAAATTCCTGTTGGAAAATATAAGACAACAAAAAGCTTGTCCTACTGCCAGTTAGAGTTTGATTGCCTATATTCCGATTTGATTAGTCATGCTCCAGAAGGGGAATATTCAAAGATGGCTCCATTTCGCATTTTAAGTTTTGACATTGAATGTGCTGGTCGCAAAGGGCATTTCCCCGAACCTACCCATGATCCTGTGATCCAGATTGCTAATTTGGTAACTTTACAAGGGGAAGGCCAGCCATTAATTCGTAACGTGATGACCCTTAATTCATGTTCCCCTATTGTTGGTGTTGATGTGATGTCATTTGATACAGAAGAAGAAGTTCTGCTAGCTTGGAGGGATTTCATCCGTGAAGTAGACCCTGATATTATTATTGGATATAACATCTGCAAATTTGACTTGCCGTATCTTATTGAGAGAGCCGCGGCCCTAAAAATAGCAGATTTTCCAATTCTGGGCCGTATCAGGAACAGTAGAGTTCGAGTAAAAGATACAACTTTTTCATCAAGGCAGTATGGGATCAGGGAAAGTAAAGAAGTTACAGTCGAAGGGAGAGTTCAGTTTGATTTGCTCCAGGTTATGCAAAGAGACTACAAATTAAGTTCTTATTCATTGAATTCTGTGTCTGCACATTTCCTTTCCGAGCAGAAGGAGGATGTTCATCATTCAATTATATCTGATCTTCAGAATGGAAGTGCAGAAACTAGAAGACGCCTTGCTGTGTACTGCTTGAAGGATGCATATCTGCCCCAGCGACTTTTGGATAAATTAATGTTCGTTTACAATTATGTGGAAATGGCACGGGTAACAGGTGTCCCAATTTCCTTTCTACTTTCCAGGGGCCAAAGCATCAAGGTGCTTTCTCAACTTCTTAGGAAGGCAAAACAAAAGAATTTGGTCATTCCTAATGCCAAGCAAGCAGGGTCAGAACAAGGAACGTTTGAAGGTGCCACTGTATTAGAGGCAAGGGCTGGATTTTATGAAAAGCCAATTGCTACTTTAGATTTTGCTTCCTTGTATCCGTCTATTATGATGGCATATAATTTATGTTATTGCACGCTGGTGACCCCTGAAAATGCACGCAATCTCAACATCCCTCCAGAGTCAGTGAACAAAACACCATCTGGTGAAACATTTGTTAAATCAAATTTACAGAAGGGTATACTTCCTGAAATTCTTGAAGAGCTATTAGCAGCCCGTAAAAGGGCAAAAGCAGATTTGAAGGAGGCAAAGGATCCCCTTGAGAAGGCCGTTCTAGATGGCAGACAGTTAGCCCTGAAGATTAGTGCAAATTCTGTATATGGGTTTACAGGGGCTACTATTGGTCAGTTACCTTGCTTAGAGATATCCTCAAGTGTAACGAGCTATGGTCGACAAATGATCGAGCACACTAAAAAGCTCGTGGAAGATAAATTTACAACACTTAATGGCTACGAACACAATGCCGAGGTAATATATGGAGACACAGATTCAGTCATGGTACAATTTGGTGCTTCTGCTGTAGAAGAGGCTATGAACTTGGGGAGAGAAGCTGCTGAATATATTAGCGGAACTTTCATAAAACCTATCAAACTAGAATTTGAGAAGATATACTTTCCATATCTCCTGATTAGCAAGAAGAGATATGCTGGTTTGTTTTGGACAAAACCAGACAATTTTGACAAAATGGACACTAAAGGTATTGAAACAGTTCGAAGAGACAATTGCTTGTTGGTCAAAAACTTGGTAAACGACTGCCTTCACAAAATACTGATTGACAGGGACGTTCCTGGGGCAGTCCAGTATGTCAAGAATGCAATTTCAGATCTTCTCATGAACCGTATGGATTTATCACTTCTGGTTATTACGAAGGGTTTGACAAAGACAGGAGATGATTATGAAGTAAAGACGGCTCATGTTGAACTCGCTGAAAGGATGCGCAAGCGAGATGCTGCTACTGCTCCAAATGTTGGAGATAGAGTACCTTACGTTATTATTAAAGCTGCCAAAGGTGCCAAGGCTTATGAGAAATCAGAAGATCCTATCTATGTGCTAGAGAACAACATACCAATAGATCCTCATTACTATCTTGAGAATCAAATTAGCAAGCCAATTCTAAGAATTTTTGAGCCAATTCTGAAGAATGCTAGCAAGGAACTTCTCCATGGAGACCACACAAGATCTATTTCTATTTCTACTCCGTCAAACAGCGGTATAATGAGATTTGCCAAGAAACAGTATACTTGCATTGGTTGCAAAGCTGTACTTAGTGGTGGTAATCGCACTCTCTGCTCACATTGCAAAGGAAGGGAAGCTGAACTGTACTGTAAATCTGTGGCTCAAGTGTCGGATCTAGAGATACTTTTTGGGAGGTTGTGGACACAGTGTCAAGAGTGCCAAGGTTCACTTCATCAGGATGTTCTCTGCACAAGTCGAGATTGTCCAATTTTTTATCGACGCAAAAAGGCACAGAAAGACATGGCTGAAGCAAGGTTGCAATTGGACAGATGGAGCTTCTAA 3258 0.4162 MNKNNSRKRSAPPPQPPPPKTKQALSLEEEFVDEDVFIDETLLSEDEESAILRDIEQRQALAARLAKWTRPPLSQEYLSQSRSILFQQLEIDYVIGESDRELLPNRSGPAAIIRIFGVTKEGHSVCCKVHGFEPYFYISCPPGMRPDDISRFHQVLEARMREANRNSNVRNLVIDVQMVQRRSIMYYQQLESQPFLKIIVALPTMVASCRGILDRGIQLDGLGMKSFMTYESNVLFALRFMIDCNIVGGNWIEIPVGKYKTTKSLSYCQLEFDCLYSDLISHAPEGEYSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQIANLVTLQGEGQPLIRNVMTLNSCSPIVGVDVMSFDTEEEVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERAAALKIADFPILGRIRNSRVRVKDTTFSSRQYGIRESKEVTVEGRVQFDLLQVMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISDLQNGSAETRRRLAVYCLKDAYLPQRLLDKLMFVYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKQAGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPENARNLNIPPESVNKTPSGETFVKSNLQKGILPEILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLNGYEHNAEVIYGDTDSVMVQFGASAVEEAMNLGREAAEYISGTFIKPIKLEFEKIYFPYLLISKKRYAGLFWTKPDNFDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIDRDVPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKTAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYEKSEDPIYVLENNIPIDPHYYLENQISKPILRIFEPILKNASKELLHGDHTRSISISTPSNSGIMRFAKKQYTCIGCKAVLSGGNRTLCSHCKGREAELYCKSVAQVSDLEILFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEARLQLDRWSF* 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3172 1085 Pfam C4-type zinc-finger of DNA polymerase delta 995 1066 IPR025687 -
Tpr3g3172 1085 Gene3D Helix hairpin bin 640 692 - -
Tpr3g3172 1085 Pfam DNA polymerase family B, exonuclease domain 119 461 IPR006133 -
Tpr3g3172 1085 Gene3D - 293 511 IPR036397 GO:0003676
Tpr3g3172 1085 Gene3D DNA Polymerase, chain B, domain 1 90 264 - -
Tpr3g3172 1085 SUPERFAMILY Ribonuclease H-like 110 531 IPR012337 -
Tpr3g3172 1085 SMART polmehr3 292 751 IPR006172 GO:0000166|GO:0003676|GO:0003887
Tpr3g3172 1085 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 82 1084 - -
Tpr3g3172 1085 CDD POLBc_delta 566 959 - -
Tpr3g3172 1085 CDD DNA_polB_delta_exo 288 517 - -
Tpr3g3172 1085 MobiDBLite consensus disorder prediction 1 24 - -
Tpr3g3172 1085 PRINTS DNA-directed DNA-polymerase family B signature 584 597 IPR006172 GO:0000166|GO:0003676|GO:0003887
Tpr3g3172 1085 PRINTS DNA-directed DNA-polymerase family B signature 676 688 IPR006172 GO:0000166|GO:0003676|GO:0003887
Tpr3g3172 1085 PRINTS DNA-directed DNA-polymerase family B signature 737 745 IPR006172 GO:0000166|GO:0003676|GO:0003887
Tpr3g3172 1085 TIGRFAM pol2: DNA polymerase (pol2) 239 956 - -
Tpr3g3172 1085 ProSitePatterns DNA polymerase family B signature. 739 747 IPR017964 GO:0000166|GO:0003676
Tpr3g3172 1085 Gene3D - 813 968 IPR042087 -
Tpr3g3172 1085 Gene3D Palm domain of DNA polymerase 567 796 IPR023211 -
Tpr3g3172 1085 SUPERFAMILY DNA/RNA polymerases 550 961 IPR043502 -
Tpr3g3172 1085 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 82 1084 - -
Tpr3g3172 1085 Pfam DNA polymerase family B 525 958 IPR006134 GO:0000166|GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3172 Tpr-Chr3 34946637 34960403 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3172 26 1085 Core DNA Replication Machinery Family AT5G63960 81.684 0.0 1843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3172 K02327 - gmx:100817379 1955.64