Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3161 ATGAACGAAGCTCAAACAGAAATCAACATTCCTCACTTGTTTAGATGTCCTATAAGTCTTGATTTGTTGGAAGATCCAGTGACTTTAACCACTGGCCAAACCTATGATAGATCAAGCATAGAAAAATGGATTTCTGCAGGTAATTTCACATGTCCTGTTACAATGCAGAAGCTTCATGATTTATCTTTTGTTCCAAATCATACTCTTCGCCATTTGATTGATCAATGGCTTCAACTTGGTTCACAATATCACCCTTCAACAAATAACTCTGCTACCATAGATTATTTAGCTTCATTGAAAAACAATCTTGAATCTCATGATTCTACTTTAGAAACCAAGTTTAAAGCACTTGAGAAAATTAAGGTTCTTTCTGATGAATATTGTTCTTTTAGAAAATCTTGTTTCCAACAACTTAGTTTCTTGTCTCTACTTTTGGAACTTGTTTTTGGTTTATGTTTATCAGATTCTAAACTCTCAGAAAATTACTTAGATTTTGTGGAGTTAACACTTTCTTGTATTCTTAAACTGTTACCTATTGTAAACTTAGAACCTTTGAATATCATCAAAGATGAATCTAAGTTAGAAAATTTCATATTTTTATTTGAAAAAGGAACTAGTTCAATTAAGACTAGTTTATGTCTTGTTATAGATTATTCAACAACAGTATCACAAACAGAAGATTTATGTCATGTACTTGGAAATTCACAAAAACTAGTACATGAAATTGTTCAAGTTGTTATGAATCAAAATAGTGTTGATAACGACGAGGTTTCTACGGCGGCAATTAAGGCCTTATCAGCATTATCTTCATTGGAATCAAACAAAGAGAGTTTAGTGAAATGTGGAGCAATAAATGGAATCATAACATATATTTCAAGATGTGAAAATGGAAAAAAGATTAATTTGGCTCCACTTGCAATGGCAACATTGAAGAAACTTTTGGTTTTGGAAAGTGGTAAAGAAGCATTGGTGAATCATGTAAATGGTATTGAAACTTTGGTTAAAATGGTTTTTAAGGTATGTAATCAAGAGTGTAGTGAAAGTGCTGTTGGAATACTTTCAATTATTTGTAGTGATTTTGGAAGTGCTAGAGAAGTAGCTATTGGAGCTGGTGTTTTGAGTCAGTTATTGTTTCTTCTGCAGAGTCAGTGTGGTACTAAAACTAAAACTAAGGCAAGAATGTTGCTTAAGTTGTTGAGATCTAAGTGGAGTGAGGAATCAATGCAAGTTTAA 1233 0.3212 MNEAQTEINIPHLFRCPISLDLLEDPVTLTTGQTYDRSSIEKWISAGNFTCPVTMQKLHDLSFVPNHTLRHLIDQWLQLGSQYHPSTNNSATIDYLASLKNNLESHDSTLETKFKALEKIKVLSDEYCSFRKSCFQQLSFLSLLLELVFGLCLSDSKLSENYLDFVELTLSCILKLLPIVNLEPLNIIKDESKLENFIFLFEKGTSSIKTSLCLVIDYSTTVSQTEDLCHVLGNSQKLVHEIVQVVMNQNSVDNDEVSTAAIKALSALSSLESNKESLVKCGAINGIITYISRCENGKKINLAPLAMATLKKLLVLESGKEALVNHVNGIETLVKMVFKVCNQECSESAVGILSIICSDFGSAREVAIGAGVLSQLLFLLQSQCGTKTKTKARMLLKLLRSKWSEESMQV* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3161 410 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Tpr3g3161 410 PANTHER OS02G0542800 PROTEIN 9 402 - -
Tpr3g3161 410 SUPERFAMILY RING/U-box 5 79 - -
Tpr3g3161 410 PANTHER WDSAM1 PROTEIN 9 402 IPR045185 GO:0061630
Tpr3g3161 410 CDD RING-Ubox_PUB 14 56 IPR045210 -
Tpr3g3161 410 Gene3D - 211 409 IPR011989 -
Tpr3g3161 410 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Tpr3g3161 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 92 IPR013083 -
Tpr3g3161 410 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Tpr3g3161 410 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 237 283 IPR000225 GO:0005515
Tpr3g3161 410 SUPERFAMILY ARM repeat 237 399 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3161 Tpr-Chr3 34810043 34811936 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3161 8 405 U-box Gene Family AT3G19380 30.508 2.64e-46 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3161 - - gmx:100819468 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3161 3 34810043 34811936 Tpr3g3161 3 34810043 34811936 ECH