Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3143 ATGGCTACCGACGCACCCTCATCCCGTCAGCTCTCTCAAAAGGAAGCTGACATCCAGCTTATGTTGGCTGCCGATGTTCATCTCGGCACCAAGAACTGTGACTACCAAATGGAGCGTTACATTTTCAAACGCCGTCAAGACGGTATTTATATTATTAATCTTGGAAAGACTTGGGAGAAACTTCAACTAGCTGCTAGGGTCATTGTTGCAATTGAGAACGCTAAGGATATTATTGTCCAATCTGCAAGGCCTTATGGACAGAGAGCTGTTCTCAAGTTTGCCCAGTACACTGGAGCTAATGCCATTGCTGGAAGGCATACTCCCGGAACTTTCACCAATCAGCTTCAGACTTCATTCAGCGAGCCTCGTCTTCTCATCCTCACCGATCCAAGAACTGATCATCAGCCAATTAAGGAAGCTGCTCTTGGAAATATTCCCACAATTGCTTTCTGTGACACTGATTCTCCTATGAGATATGTTGACATTGGAATTCCTGCTAACAACAAGGGAAAGCATAGCATTGGTTGTCTCTTTTGGCTTTTGGCTAGGATGGTTTTGCAGATGCGTGGTACTATTCGCCCTGGTCATAAGTGGGATGTGATGGTTGATCTCTTCTTCTATAGAGATCCAGAGGATGCCAAGGAGCAAGAAGATGAGGATGTTACTGCTCCAGATTATGCTATTGCTGATTTCAATGCAGCTTCTATCCCCACTGATGGACAGTGGCCTTCTGCTATTGATCAGCCATGGACTGATGCTGTTCCTGAACCTATTTCAGCAGCTCCTGCTGTCAACTGGTCTGCCCCAGAAGCTGTTGCAGGAGGGGACTGGGGTGAAGCCGTTCCACCACCACAACAAATACCTGCTCCCGGAGTTGAATCCATCCAGGCCACTGGCTGGGAATAA 906 0.4713 MATDAPSSRQLSQKEADIQLMLAADVHLGTKNCDYQMERYIFKRRQDGIYIINLGKTWEKLQLAARVIVAIENAKDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRDPEDAKEQEDEDVTAPDYAIADFNAASIPTDGQWPSAIDQPWTDAVPEPISAAPAVNWSAPEAVAGGDWGEAVPPPQQIPAPGVESIQATGWE* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3143 301 MobiDBLite consensus disorder prediction 269 301 - -
Tpr3g3143 301 Pfam Ribosomal protein S2 21 114 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tpr3g3143 301 Pfam Ribosomal protein S2 120 185 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tpr3g3143 301 Hamap 40S ribosomal protein SA [rps-0]. 5 280 IPR027498 GO:0003735|GO:0006412|GO:0015935
Tpr3g3143 301 Gene3D - 17 222 - -
Tpr3g3143 301 ProSitePatterns Ribosomal protein S2 signature 2. 122 146 IPR018130 GO:0003735|GO:0005840|GO:0006412
Tpr3g3143 301 PRINTS Ribosomal protein S2 signature 18 36 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tpr3g3143 301 PRINTS Ribosomal protein S2 signature 48 57 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tpr3g3143 301 PRINTS Ribosomal protein S2 signature 97 114 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tpr3g3143 301 PRINTS Ribosomal protein S2 signature 122 139 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tpr3g3143 301 PRINTS Ribosomal protein S2 signature 139 150 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tpr3g3143 301 PRINTS Ribosomal protein S2 signature 160 174 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tpr3g3143 301 CDD RPS2 21 187 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tpr3g3143 301 SUPERFAMILY Ribosomal protein S2 13 203 IPR023591 -
Tpr3g3143 301 PANTHER 40S RIBOSOMAL PROTEIN SA 1 291 - -
Tpr3g3143 301 PANTHER 40S RIBOSOMAL PROTEIN SA 1 291 IPR005707 GO:0003735|GO:0006412|GO:0015935
Tpr3g3143 301 TIGRFAM uS2_euk_arch: ribosomal protein uS2 14 208 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3143 Tpr-Chr3 34652181 34655706 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3143 5 275 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 74.286 8.78e-151 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3143 K02998 - gmx:100805318 532.332