Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3136 ATGACCAACACACATTTCAGAAAACCAATTCAACACCACCATTTCCCAATTTTCAGATCCACCTTCTTCCTCCTCACCATGGCAGCAACAACCCTCTCATTCCTCTTCCTCTTCTTCTTCCTCCTCTCCTCCTCCTCCTCCCACTCCACCCCCATCCACCACATTCAACAAGCTTGCAAAGCCACACGTTTCCCTCACCAATGTCAAACCACCCTCACCTCCCACCTTCATCACCTTCCCTTCAACCCTACCCCTCTCAACATCATCTATTCCTCAATTTCACTTTCTTCTCTAAACCTCAAAATCGCGCAATCAATGCTCGATTCCATGTTACGCGGTTCCGCAGGTAATCACCCCCACATCACCATCGCGAAAAGCTGTCTTCAAGTTTTTCAATACTCTCATCACCGTACATCTCTCACCGTTCAAGCACTCTCACGTGGTAGAACTAAAGACGCACGTGCTTTCATGAGTGCTGCATTGGCTTATCAGTATAATTGTTGGTCTGGTCTTAAATATGCTAATGATACTGAATTGGTTTCCAAAACGATGTCGTTTCTTGTTTCTCTCACCAATATTTCCAGTAATGCTCTTAGTATGATTGTCTCGTATGATTTATTTGGTAACAATACTGATTTATGGAGGCCTCCGAGAACCGAACGGGATGGATTTTGGGAGGATTCTGGCTCCGGCGTGTTCGGGGCGGGACCGTCTGTACCGGCGAATCTTACGCCGGATGTTACCGTGTGTAAGGAGACGGGTAGTGGGTGTTATGGGACGGTGCAGGAAGCGGTTGATGCCGCGCCTGATAATGTGGATGTTGGTGGAAGGAGATTTGTGATATATATAAAAGAAGGGGTTTATGAAGAGAGGGTTAGGGTTCCGTTAAGAAAGAAGAATGTTGTGTTTTTGGGTGATGGCATTGGGAAGACTGTCATCACTGGCTCGGCTAGTGTCGGATTAATGGTGGGGATGACGACCTATAACTCTGCCACAGTAGGAGTTGCTGGGGATGGATTCATGGCAAAGGATCTGACAATCGAAAACACAGCAGGTGCTAATGCACACCAAGCAGTAGCATTCAGATCAGACAGTGATCTTTCTGTTATTGAGAATTGTGAATTCATAGGAAACCAAGATACTCTATATGCTCAAGCCATGCGTCAGTTTTATAAATCTTGCCGTATTATAGGGAATGTCGATTTCATCTTTGGAAACTCGGCTTCATTCTTCAAAGACTGCAAAATCCTAGTCCAGCCCAGGCAAGCAAGGCCTAAGAAAGGGGAGAACAATGCCATTACTGCACATGGCAGAACAGATCCAGCTCAGTCTACCGGTTTTGTTTTCCACAACTGCTTGGTTAATGGTACTGAGAAGTATATGGAATTGTATTATGACAAGCCTAATGTACACAAGAACTATCTCGGAAGGCCATGGAAGGAGTATTCTAGAACAGTTTTTATTAATTCGTACTTGGAAGCCTTAATCACGCCCCAGGGTTGGTTGCCATGGAGTGCAGATGTTGGACTGAATACACTCTACTACGGGGAATTCGGCAACACTGGACCTGGTTCTAATTTGACCAACAGAGTGTCCTGGAGTAGCCAGGTTCCTGCTGAACATGTGTCCACGTATTCCGTACAGGGTTTCCTTCAAGGAGATGATTGGGTTCATCGTAGCAGTTATTAG 1689 0.4565 MTNTHFRKPIQHHHFPIFRSTFFLLTMAATTLSFLFLFFFLLSSSSSHSTPIHHIQQACKATRFPHQCQTTLTSHLHHLPFNPTPLNIIYSSISLSSLNLKIAQSMLDSMLRGSAGNHPHITIAKSCLQVFQYSHHRTSLTVQALSRGRTKDARAFMSAALAYQYNCWSGLKYANDTELVSKTMSFLVSLTNISSNALSMIVSYDLFGNNTDLWRPPRTERDGFWEDSGSGVFGAGPSVPANLTPDVTVCKETGSGCYGTVQEAVDAAPDNVDVGGRRFVIYIKEGVYEERVRVPLRKKNVVFLGDGIGKTVITGSASVGLMVGMTTYNSATVGVAGDGFMAKDLTIENTAGANAHQAVAFRSDSDLSVIENCEFIGNQDTLYAQAMRQFYKSCRIIGNVDFIFGNSASFFKDCKILVQPRQARPKKGENNAITAHGRTDPAQSTGFVFHNCLVNGTEKYMELYYDKPNVHKNYLGRPWKEYSRTVFINSYLEALITPQGWLPWSADVGLNTLYYGEFGNTGPGSNLTNRVSWSSQVPAEHVSTYSVQGFLQGDDWVHRSSY* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3136 562 Pfam Plant invertase/pectin methylesterase inhibitor 55 200 IPR006501 GO:0004857
Tpr3g3136 562 SUPERFAMILY Pectin lyase-like 245 558 IPR011050 -
Tpr3g3136 562 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 201 IPR035513 -
Tpr3g3136 562 CDD PMEI-like_3 58 201 - -
Tpr3g3136 562 Gene3D - 240 562 IPR012334 -
Tpr3g3136 562 PANTHER PECTINESTERASE 38 559 - -
Tpr3g3136 562 Pfam Pectinesterase 246 554 IPR000070 GO:0030599|GO:0042545
Tpr3g3136 562 SMART PMEI_2 50 200 IPR006501 GO:0004857
Tpr3g3136 562 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 38 559 - -
Tpr3g3136 562 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 203 IPR035513 -
Tpr3g3136 562 TIGRFAM PME_inhib: pectinesterase inhibitor domain 32 201 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3136 Tpr-Chr3 34581796 34584519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3136 54 561 Carbohydrate Esterase AT5G09760 63.035 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3136 - - gmx:100802102 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3136 3 34581796 34584519 Tpr3g3136 3 34581796 34584519 ECH
Tpr3g0833 3 7876227 7880810 Tpr3g3136 3 34581796 34584519 PCT