Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3133 ATGAGTGAAACTGGCAGAAAGCGCTCTTCAAAGTGGGATTTGAGTGATGAACACAGGCAAATGCGATCTGGGTGGTCCTCTGCAGATGTTGCTGGTAACAATAGTTCAAAATGGGCTTATTCGGAAGGAAATGATAAATTAAGACCTGTTATGGGATATTCATCAAAAGAATCTTTTTCTGGAGGCAGAGGTTCATATGAGGATGATGCTATGAATGAAGACCATAGAATTTTGGATACAAGAAGAGAATGGAACACTGATGGAAGTTACAGCAAGAAAAGGTCTCCTTGGCAAGAGGAATGGGAACCAAAGAGACGCAGTCAATCTCCAATAAATGGTTGGAACAGGAGCAGTCGGAGCCGGAGTCAGAGCCGGAGCCCTCCTCGTGGTTTTAGGCGGGATTCAGGCATTGATGACAGAAAAAGGATGAGGGTTGTAGGATCAACGCGACCGTGCAGAGATTTTGCTGTTGGTAAATGCAGAAGAGGCAGTCTTTGCAATTTTCTGCATCATGATAACCAAAATCGTGAGAATAGTTGGGAGGGTAAGCACAGGGAAGATAGAGCTCCCAGATACTCTGCTACGCATGAGAGAGGTGACCATTCTCTTAAGAGTGGTAGATCTATGCACGATAACGATTCTGACGGATATGGTAAAGTTTCTATGGATGAATTCACTAGAGAAAGGGAAGATAGAGCTCCCAGATATCCACCCCATGAGGACGGGGACCGTTCTCTTAAGAGGGGCAGATCTAGTGAAGTTTGTACAAATTTTGCAAAAGGCAGGTGTAGAATGGGAACATCTTGCAAGTTTGTGCATGATAACGATTCTGATGGATATGGCAAAGTTTGTATGGATGAATTCACTAGAGACAGGGAAATTGACAGAAGGCACAGAGATAATTCTTTTGAGCAGGGTGGCCGGCATGTGCCTAATCGCACTAGTGATACTCCTTGCAAATTTTTTGCTAATGGAAATTGTCGAAATGGTAAATTTTGTAAGTTTTCTCACGATAGGCAAGCATGTAGGAGCCCTAATAGAAGATTAAGGGATGATAGATGGGCAAGAAATCCAGGTAGAGATCATCAAATGTTGGATAGACAAAAATGGAGTGATTCCATGAGTCCAAATAGAAGGCCAAGAGATGATAGATGGGGTTCGGATGGCGATGTGGCTGATCCAGATAGAGTTGGGGACAGTCCAAAGCGAAATAATAAAGTTTCTGTCTCTGATACAACAAAGCTGATCGAGAATAAAAGTGGAAATGTAGATGCCACAGACCCAGGATTTACTACTTTATCTGTAACGGATGGATATGGGCATGAATTAGATAAGAGTGAGCTGCATGGTAAACCACCAATTTCAAGTGATACGAAGGAAGCTGATTGTTGGATAGAAGAAAATACCGGTGGCAACATGCACGGATCCCATTCAATAGTTACAAAAGACATTTGGCCAGGTGATGCAGAAATGTCTCCTGATTGGAATTATAAGACAGGACCTTCCAGCCATATGGAAGAACCTGGACAGAATAAGCACGGTATAAGGCAGGGTGGTACATATTTAGCCATCTCAGAACCCGACAGAGTACAACTTGCTCCAGGACAAAGCATCAATCAGAATGCACAGAATGTTAATCCTTTGCATACTTCCAGCTGCCATGAAGTTGAACAAAGTCAAGTGGATGTTCCCATTCTTCCTTCAAGTGGAGGAATTGTTGATGCTACACACAGACAAGAAGTATCTACTGAGAAAAAGTACACTGTGGAACCAAATATCACAGATTCAGGCTTATCACAAGTTAGGTCAATAAATCCTCCAACACAAAATGCCGTAAGCAATGAACAACTTGCTCAACTCACAACCTCTCTGGCTCATATCCTAGGAGCAGGTCAGCAGCTGCCGCAGCTATATGCTGCTTTAAATTCTCACGATTTAAAGGACAGTCCTTCTCAAGCAAAAACTCAAGTGCCTGCAATGCCTGTTTCAATCACATGCATCAATCCTGTTCCTGCCGTTGGATTCCCAAAGCAGTATGGTCCCGTGAATGATAGTATTGAGCAAAAAAATGCTGATGCAAGTGGTGTTCCCCCAGCCATCCCTCCAAGTAAAAATATTGCTGAAGTGGAAATTCTGTCACAGTTGTCTAACCCTGGAAAACAAAATTGTGGTGATTCTATTAAGGGTGCCTCCTCAGAACTTGTCAAGAGTGATAATCTAATCCATTTGCAGCCTGGTCAAAACACAGTGGTGAATAAGGATAACAATGAAGAGGTAGCTAAGGAAAGGAAAAATTCTGAAGATGGTCATAAAAGTACAAAAGAGAATGGTCCACAAAACACAGACCAAAATGCTAGGCCTGATGATGCCAAGCAAACAAAGGAGATGAAAGGGATTCGTACTTTTAAATTTGCATTGGCTGAGTTTGTTAAGGAGCTTCTGAAACCAGCATGGAAAGAAGGTCAAATAACTAATAAAGAAGATTATAAAACCATTGTGAAGAAAGTTCTTGATAAAGTAACGGCTACCATGCAGGCGGCTAATATTCCTCAGACACAAGAGAAAATTGACCAATATTTGTCATTTTCAAAACCAAAGCTAAACAAACTTGTACAGGCATATGTGGAAAAGGTTCAGAAGCCCCAGTGA 2649 0.4205 MSETGRKRSSKWDLSDEHRQMRSGWSSADVAGNNSSKWAYSEGNDKLRPVMGYSSKESFSGGRGSYEDDAMNEDHRILDTRREWNTDGSYSKKRSPWQEEWEPKRRSQSPINGWNRSSRSRSQSRSPPRGFRRDSGIDDRKRMRVVGSTRPCRDFAVGKCRRGSLCNFLHHDNQNRENSWEGKHREDRAPRYSATHERGDHSLKSGRSMHDNDSDGYGKVSMDEFTREREDRAPRYPPHEDGDRSLKRGRSSEVCTNFAKGRCRMGTSCKFVHDNDSDGYGKVCMDEFTRDREIDRRHRDNSFEQGGRHVPNRTSDTPCKFFANGNCRNGKFCKFSHDRQACRSPNRRLRDDRWARNPGRDHQMLDRQKWSDSMSPNRRPRDDRWGSDGDVADPDRVGDSPKRNNKVSVSDTTKLIENKSGNVDATDPGFTTLSVTDGYGHELDKSELHGKPPISSDTKEADCWIEENTGGNMHGSHSIVTKDIWPGDAEMSPDWNYKTGPSSHMEEPGQNKHGIRQGGTYLAISEPDRVQLAPGQSINQNAQNVNPLHTSSCHEVEQSQVDVPILPSSGGIVDATHRQEVSTEKKYTVEPNITDSGLSQVRSINPPTQNAVSNEQLAQLTTSLAHILGAGQQLPQLYAALNSHDLKDSPSQAKTQVPAMPVSITCINPVPAVGFPKQYGPVNDSIEQKNADASGVPPAIPPSKNIAEVEILSQLSNPGKQNCGDSIKGASSELVKSDNLIHLQPGQNTVVNKDNNEEVAKERKNSEDGHKSTKENGPQNTDQNARPDDAKQTKEMKGIRTFKFALAEFVKELLKPAWKEGQITNKEDYKTIVKKVLDKVTATMQAANIPQTQEKIDQYLSFSKPKLNKLVQAYVEKVQKPQ* 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3133 882 MobiDBLite consensus disorder prediction 26 41 - -
Tpr3g3133 882 Gene3D Set2, Rpb1 interacting domain 782 881 IPR038190 -
Tpr3g3133 882 Gene3D - 239 299 - -
Tpr3g3133 882 Pfam RNA-binding, Nab2-type zinc finger 255 273 - -
Tpr3g3133 882 MobiDBLite consensus disorder prediction 755 775 - -
Tpr3g3133 882 SMART c3hfinal6 148 172 IPR000571 GO:0046872
Tpr3g3133 882 SMART c3hfinal6 250 275 IPR000571 GO:0046872
Tpr3g3133 882 SMART c3hfinal6 313 339 IPR000571 GO:0046872
Tpr3g3133 882 ProSiteProfiles Zinc finger C3H1-type profile. 249 276 IPR000571 GO:0046872
Tpr3g3133 882 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 318 338 IPR000571 GO:0046872
Tpr3g3133 882 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 149 171 IPR000571 GO:0046872
Tpr3g3133 882 MobiDBLite consensus disorder prediction 1 23 - -
Tpr3g3133 882 MobiDBLite consensus disorder prediction 403 421 - -
Tpr3g3133 882 SUPERFAMILY CCCH zinc finger 315 338 IPR036855 GO:0046872
Tpr3g3133 882 MobiDBLite consensus disorder prediction 744 794 - -
Tpr3g3133 882 ProSiteProfiles Zinc finger C3H1-type profile. 147 173 IPR000571 GO:0046872
Tpr3g3133 882 MobiDBLite consensus disorder prediction 176 251 - -
Tpr3g3133 882 Gene3D - 311 381 - -
Tpr3g3133 882 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 229 879 - -
Tpr3g3133 882 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 1 230 - -
Tpr3g3133 882 MobiDBLite consensus disorder prediction 1 144 - -
Tpr3g3133 882 ProSiteProfiles Zinc finger C3H1-type profile. 313 340 IPR000571 GO:0046872
Tpr3g3133 882 MobiDBLite consensus disorder prediction 353 402 - -
Tpr3g3133 882 MobiDBLite consensus disorder prediction 108 125 - -
Tpr3g3133 882 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 229 879 - -
Tpr3g3133 882 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 230 - -
Tpr3g3133 882 MobiDBLite consensus disorder prediction 67 106 - -
Tpr3g3133 882 MobiDBLite consensus disorder prediction 176 250 - -
Tpr3g3133 882 MobiDBLite consensus disorder prediction 353 421 - -
Tpr3g3133 882 MobiDBLite consensus disorder prediction 127 144 - -
Tpr3g3133 882 SUPERFAMILY CCCH zinc finger 249 274 IPR036855 GO:0046872
Tpr3g3133 882 Gene3D - 146 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3133 Tpr-Chr3 34553610 34613835 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr3g3133 zf-CCCH 1.9e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3133 - K22909 gmx:100783856 1076.62