Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3132 ATGCTTAGAACAATGGCGTCGCGATTGGTGAAGCATGAGCATATCGAAACTACTGTTGCCAAGGCTAAGAAGATTAGAAGGCTTGCGGTTGCGGATAATATGGTACAACTTGGAAAAGAGCTAGCCAACTTCATCCAACGTACGCATACACGGCACAACCTCAAGAAGTTGCGGCTGAAGAAGTACAGGTCGATGGCTGATATAATGGCGAGGGCGAGGTACGCGGTGGTGGAAAAAGAGGATTACGGTGGCATCATGTGTGACCAATGTGGCTCCGGTGACAACTCGGAGGAGCTGCTGCTGTGCGACAAATGTGACAATGGTTTTCATATGAAATGTGTGAGACCAATTGTTGTCAGAATTCCTATTGGTTCGTGGGTTTGCCCCAAGTGTTCAGGAACGAAGAAAGCGACAAAGTTCACTCAAAAAAAAATTCTAGATTTCTTCGGGATTCGAAGGCGGGATTTCAAAGTGAATCTTTCTTCTCCTCAGGATGCTAGGAGGCGTCGGAGACGTCCAAGACCTCTGGTGGTACAGAAGAAAAGCAGGAGACTTTTACCATTTGTTCCTACAAATGATCCTGATAGGAGACTGAAGCAAATGGCTTCCCTTGCTTCCGCTTTAACAACATTGAATATGGAATTCAGTAATCACTTGACGTATTTTCCAGGAATGGCTCCCAAATCTGCTAATCGATCCATTTTAGAAAACGGTGGCATGCAGGGTCTTACAAAGGAAGATGGGGAGACCTTAGAATGCTGCATAGCTATGACTAAGCGAGGCAAATTCCCTCCTTTAATGGTCGTTTATGACTCATGTCAAGGCTATACTGTGGAGGCTGATGGCCTAATCAAAGATATGACATTTATTGCTGAATACACCGGCGATGTGGATTATTTAAAGAAAAGAGAATCTGATGATTGCGACAGTATGATGACGCTGCTTCTTACAGCAGAAGGTGATAACAGTCTTGTTATTTGTGCTGATAAACGCGGAAATATTGCTCGCTTCATCAGTGGCATCAACAATCATACTCCGGATGGTAGGAAGAAGCAAAACTGCAAATGTTTGAGATACAATGTTGATGGGGAATCCCGGGTCTTTTTGGTTGCTACTCGAGATATTTCCGAGGGGGAGAGGCTATATTATGATTATAATGGTTATGAGAATCAATACCCAACTCATCATTTTGTCTGA 1197 0.4386 MLRTMASRLVKHEHIETTVAKAKKIRRLAVADNMVQLGKELANFIQRTHTRHNLKKLRLKKYRSMADIMARARYAVVEKEDYGGIMCDQCGSGDNSEELLLCDKCDNGFHMKCVRPIVVRIPIGSWVCPKCSGTKKATKFTQKKILDFFGIRRRDFKVNLSSPQDARRRRRRPRPLVVQKKSRRLLPFVPTNDPDRRLKQMASLASALTTLNMEFSNHLTYFPGMAPKSANRSILENGGMQGLTKEDGETLECCIAMTKRGKFPPLMVVYDSCQGYTVEADGLIKDMTFIAEYTGDVDYLKKRESDDCDSMMTLLLTAEGDNSLVICADKRGNIARFISGINNHTPDGRKKQNCKCLRYNVDGESRVFLVATRDISEGERLYYDYNGYENQYPTHHFV* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3132 398 Pfam SET domain 316 386 IPR001214 GO:0005515
Tpr3g3132 398 CDD SET_ATXR5_6-like 261 398 - -
Tpr3g3132 398 ProSitePatterns Zinc finger PHD-type signature. 87 131 IPR019786 -
Tpr3g3132 398 SUPERFAMILY Prokaryotic ribosomal protein L17 1 60 IPR036373 GO:0003735|GO:0005840|GO:0006412
Tpr3g3132 398 PANTHER HISTONE ACETYLTRANSFERASE 46 396 - -
Tpr3g3132 398 Gene3D Ribosomal protein L17 1 79 IPR036373 GO:0003735|GO:0005840|GO:0006412
Tpr3g3132 398 CDD PHD_RSF1 86 131 - -
Tpr3g3132 398 Gene3D SET domain 169 398 IPR046341 -
Tpr3g3132 398 ProSiteProfiles SET domain profile. 264 386 IPR001214 GO:0005515
Tpr3g3132 398 Pfam PHD-finger 86 132 IPR019787 -
Tpr3g3132 398 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 46 396 - -
Tpr3g3132 398 Pfam Ribosomal protein L17 1 57 IPR000456 GO:0003735|GO:0005840|GO:0006412
Tpr3g3132 398 SUPERFAMILY FYVE/PHD zinc finger 78 139 IPR011011 -
Tpr3g3132 398 SUPERFAMILY SET domain 251 386 IPR046341 -
Tpr3g3132 398 SMART PHD_3 86 132 IPR001965 -
Tpr3g3132 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 148 IPR013083 -
Tpr3g3132 398 ProSiteProfiles Zinc finger PHD-type profile. 84 134 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3132 Tpr-Chr3 34553504 34565515 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3132 87 167 C2H2 Transcription Factor Family AT3G01460 30.488 9.23e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr3g3132 SET 3.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3132 K24406 - gmx:100785817 528.48