Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3131 TCCAATCCAATGGCTCCGACAACCCCATCCCCTTCATCTCCAAAGCTTGTCAGCTTAATCCGCGGTACGCATGCACCCCAAGACATTCAGAAGAAGTTGCGGCTTAAGAAATATAAATCGATGGAGGATATAATGGCAAGGGCAAGGTACGTCGTGCTTGAAAAGGAGGATTATAGTAACACCCTGTGTGAAAAATGCGGCTCCGGTGACAACCCAGATGAACTCATTTTATGCGATAGATGTGATGGCGGTTTCCACATGAAATGTGTGAGACCAATTCTTGCAAGAATTCCAATTGGACAATGGATTTGCCCCAACTGTTCAGGCACAAAGAAAGAAACAAAGTTCACTGAAAGGAGAATTCTAGAATTTTTCGGAATTCGAAGGGTGGATTTCAGAAATGTTTCTTCCCCTCATGATGCTAGGAGGCGTCGGAGACGTCAAAGACCTCTTGTGTTACAAAAGAAAAGCAGGAGAATTTTACCATTTGTTCCTACAAAAGATCTTGATAGGAGACTGAAACAAATGGCTTCTCTTGCTTCTGCTTTAACATCTTTGAATATGGAGTTCAGTAATCACCTCACTTACTTTCCAGGAATGGCTCCTAGGTCTGCTAACCAATCATCTTTAGAAAATGGTGGCATGCAGATTCTTACTAAGGAAGATCATGAGACCATAGAACGTTGCACAACAATGATTAAACAAGGCGAATTTCCTCCCTTGATGGTCGTTTACGATTCATGTCAAGGCTATACTGTGGAGGCTGATGGCCCAATCAAAAAAATGACATTTATTGCAGAATACACAGGAGATGTTGATTATCTAAAGAAAAGAGAATCTGATGATTGCGACAGTATAATGACGCTGCTTCTTGCAGAAGAAAGTGCTTCTAGTCTTGTTATTTGTGCTGATAAACGCGCAAACATTTCTCGTTTTATCAGTGGCATCAACAACCATAACCCGGAAGGTAAGAAGAAGCAAAACTGCAAATGTGTCAGATATGCTGTTGACGGCGAATCTCGAGTATTTTTGGTTGCTATCCGAGATATTTCGGAAGGCGAAAAATTATATTATGACTACAATGGTTTCGAGTATCAATACCCGACACATAATTTTGTCTGA 1122 0.4109 SNPMAPTTPSPSSPKLVSLIRGTHAPQDIQKKLRLKKYKSMEDIMARARYVVLEKEDYSNTLCEKCGSGDNPDELILCDRCDGGFHMKCVRPILARIPIGQWICPNCSGTKKETKFTERRILEFFGIRRVDFRNVSSPHDARRRRRRQRPLVLQKKSRRILPFVPTKDLDRRLKQMASLASALTSLNMEFSNHLTYFPGMAPRSANQSSLENGGMQILTKEDHETIERCTTMIKQGEFPPLMVVYDSCQGYTVEADGPIKKMTFIAEYTGDVDYLKKRESDDCDSIMTLLLAEESASSLVICADKRANISRFISGINNHNPEGKKKQNCKCVRYAVDGESRVFLVAIRDISEGEKLYYDYNGFEYQYPTHNFV* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3131 373 SUPERFAMILY FYVE/PHD zinc finger 53 114 IPR011011 -
Tpr3g3131 373 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 30 371 - -
Tpr3g3131 373 ProSiteProfiles Zinc finger PHD-type profile. 60 110 IPR019787 -
Tpr3g3131 373 ProSitePatterns Zinc finger PHD-type signature. 63 107 IPR019786 -
Tpr3g3131 373 PANTHER HISTONE ACETYLTRANSFERASE 30 371 - -
Tpr3g3131 373 Pfam SET domain 245 361 IPR001214 GO:0005515
Tpr3g3131 373 CDD SET_ATXR5_6-like 236 373 - -
Tpr3g3131 373 Pfam PHD-finger 63 108 IPR019787 -
Tpr3g3131 373 SMART set_7 240 367 IPR001214 GO:0005515
Tpr3g3131 373 CDD PHD_RSF1 62 107 - -
Tpr3g3131 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 121 IPR013083 -
Tpr3g3131 373 SMART PHD_3 62 108 IPR001965 -
Tpr3g3131 373 Gene3D SET domain 145 373 IPR046341 -
Tpr3g3131 373 SUPERFAMILY SET domain 226 363 IPR046341 -
Tpr3g3131 373 ProSiteProfiles SET domain profile. 239 361 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3131 Tpr-Chr3 34542596 34545196 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3131 63 141 C2H2 Transcription Factor Family AT3G01460 31.707 4.34e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr3g3131 SET 4.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3131 K24406 - gmx:100785817 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3131 3 34542596 34545196 Tpr3g3131 3 34542596 34545196 ECH