Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3127 ATGGCTACCGACGCACCCTCATCCCGTCAGCTCTCCCAAAAGGAAGCTGACATCCAGCTGATGTTGGCTGCCGATGTTCATCTCGGCACCAAGAACTGTGACTACCAAATGGAGCGTTACATTTTCAAACGCCGTCAAGACGGTATTTATATTATTAATCTTGGAAAGACTTGGGAGAAACTTCAACTAGCTGCTAGGGTCATTGTTGCCATTGAGCACGCTGAGGATATTATTGTCCAATCTGCAAGGCCTTATGGACAGAGGGCAGTTCTGAAGTTTGCTCAGTACACTGGAGCTCATGCCATTGCTGGAAGGCACACTCCCGGAACTTTCACCAATCAGCTTCAGACTTCATTCAGCGAGCCTCGTCTTCTCATCCTCACCGATCCAAGAACTGATCATCAGCCAATCAAGGAAGCTGCTCTTGGAAATATTCCCACAATTGCTTTCTGTGACACTGATTCTCCTATGAGATATGTTGACATTGGAATTCCTGCTAACAACAAGGGAAAGCATAGCATTGGTTGTCTCTTTTGGCTTTTGGCTAGGATGGTTTTGCAGATGCGTGGTACTATTCGCCCTGGTCATAAGTGGGATGTGATGGTTGATCTCTTCTTCTATAGAGAACCCGAGGAAGCCAAGGAGCAAGAGGAGGAGGAAAATCCCGCTCAAGATTACGCCATTGCTGACTTCAATGCTGTTCCATCTGATGCTCAGTGGCCTGCTACCATTGATCAACCATGGGCTGATGCTGTCCCACAACCTATTTCAGCAGCTCCTGCTGCCAACTGGGCAGGCCAAGAAGCTGTTGCAGGGGACTGGGGTGAAGCTGTACCACCTCCACAACAAATTCCCATTGCCGGAACTGAATCTGTGGCAGCAACTGGCTGGGATTTAAACTAG 903 0.4839 MATDAPSSRQLSQKEADIQLMLAADVHLGTKNCDYQMERYIFKRRQDGIYIINLGKTWEKLQLAARVIVAIEHAEDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEEAKEQEEEENPAQDYAIADFNAVPSDAQWPATIDQPWADAVPQPISAAPAANWAGQEAVAGDWGEAVPPPQQIPIAGTESVAATGWDLN* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3127 300 PANTHER 40S RIBOSOMAL PROTEIN SA 1 288 - -
Tpr3g3127 300 Pfam Ribosomal protein S2 21 115 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tpr3g3127 300 Pfam Ribosomal protein S2 120 185 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tpr3g3127 300 PRINTS Ribosomal protein S2 signature 18 36 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tpr3g3127 300 PRINTS Ribosomal protein S2 signature 48 57 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tpr3g3127 300 PRINTS Ribosomal protein S2 signature 97 114 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tpr3g3127 300 PRINTS Ribosomal protein S2 signature 122 139 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tpr3g3127 300 PRINTS Ribosomal protein S2 signature 139 150 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tpr3g3127 300 PRINTS Ribosomal protein S2 signature 160 174 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tpr3g3127 300 SUPERFAMILY Ribosomal protein S2 13 203 IPR023591 -
Tpr3g3127 300 ProSitePatterns Ribosomal protein S2 signature 2. 122 146 IPR018130 GO:0003735|GO:0005840|GO:0006412
Tpr3g3127 300 MobiDBLite consensus disorder prediction 268 300 - -
Tpr3g3127 300 CDD RPS2 21 187 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tpr3g3127 300 PANTHER 40S RIBOSOMAL PROTEIN SA 1 288 IPR005707 GO:0003735|GO:0006412|GO:0015935
Tpr3g3127 300 Gene3D - 17 223 - -
Tpr3g3127 300 TIGRFAM uS2_euk_arch: ribosomal protein uS2 14 209 IPR005707 GO:0003735|GO:0006412|GO:0015935
Tpr3g3127 300 Hamap 40S ribosomal protein SA [rps-0]. 5 267 IPR027498 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3127 Tpr-Chr3 34403383 34405574 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3127 5 274 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 75.451 2.59e-151 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3127 K02998 - gmx:100805318 505.368