Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3122 ATGGTTAGAGAACAAAAAGTTCTTGATCTATGCATAACTGTTCCCACCTTCTTCAAATGCCCAATCTCACTAGATGTAATGAAATCCCCTGTTAGTCTCTGTACCGGAATCACCTACGACCGTTCCAGCATCCAACGGTGGTTAGACGATGGCAATAACACGTGTCCCGCTACCATGCAAACTCTCCACAGTAAAGATATTGTTCCTAACCGTACTCTACATAGTCTAATCCAGATCTGGACCGATTCGGTTCATCACCGGGTTAACCCGCCCGTTTCACCTTCAAAAGAACAAGTCCTTCAAGCCATCACTGAATTAACTGATTCCAACGGTTTAAATTTAAACCGGTTCGGTTTAATCACAAAAGTGAACCGTTTCGCTCAAGATTCCGATCAGAACAAAGGTTTTTTAGCGAAATTAGACGGTTTCGTTGCTTTGATGGTTAGTTTACTTGACAATGTCGACGGAAGCGTGGAATTTCTTGAACAAATTTTAACGGCGTTAGGTTTTGTTCTTGAAAAAATCGAAGATCGTGAAGAATTGAAAAATCGTTTGTTGAAAGGAAATAACAAAAAATGCTTAGATTCTTTCGTTCTCGTTTTGCAACGAGGAAGTAACAATTCGAGAATCGCAGCTGCGAGAGTTTTGAAATTCATCGCTATAGACGCTGAATCAGAGCTTCTAATCGGTGAGAATGAAGCTTTGATAACCGAATTGTTGAATTTATCAACGCCGGAGAAAGAGAAAGATCCAAAGCTGATTGAGAATTGCTTAGCGTGCTTAGTATCGATTTCAAAACCGAAACGGAACAAGATGAAGCTGGTGAAAATCGGAGCAATGAAGATTCTATCGAAGTTACTAACGGAATCGAATATAAGCGTTGCGGTTGTGGAAAAGGCGTTGAAGTTAGTTGAAACGGCGTCGTCGACGAGTGAAGGAAGAAAAGAGATTTGTGAAGACGCAACTTGCGTGGCGGCGATATTGAATAAAGTTTTGAAAGTATCTAACGTTGCGACGGAACACAGCGTAACGACGCTGTGGAGTGTTTGTTATTTGTTTCGCGATCAGAAAGCGCAAGAAGCGGTTACGCAAGCGAATGGATTAACGAAGATTTTGTTGCTAATACAGAGTAATTGTTCGCCACATGTTCGACAAATGTGTATGGATTTGCTTAAGATTTTTCGGGTTAATTCTAAATCATGTCTTTCAAGTTATGATACTAAGACTTCTCATATTATGCCATTTTGA 1248 0.4038 MVREQKVLDLCITVPTFFKCPISLDVMKSPVSLCTGITYDRSSIQRWLDDGNNTCPATMQTLHSKDIVPNRTLHSLIQIWTDSVHHRVNPPVSPSKEQVLQAITELTDSNGLNLNRFGLITKVNRFAQDSDQNKGFLAKLDGFVALMVSLLDNVDGSVEFLEQILTALGFVLEKIEDREELKNRLLKGNNKKCLDSFVLVLQRGSNNSRIAAARVLKFIAIDAESELLIGENEALITELLNLSTPEKEKDPKLIENCLACLVSISKPKRNKMKLVKIGAMKILSKLLTESNISVAVVEKALKLVETASSTSEGRKEICEDATCVAAILNKVLKVSNVATEHSVTTLWSVCYLFRDQKAQEAVTQANGLTKILLLIQSNCSPHVRQMCMDLLKIFRVNSKSCLSSYDTKTSHIMPF* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3122 415 SUPERFAMILY RING/U-box 10 83 - -
Tpr3g3122 415 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Tpr3g3122 415 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 9 415 - -
Tpr3g3122 415 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Tpr3g3122 415 Pfam U-box domain 14 82 IPR003613 GO:0004842|GO:0016567
Tpr3g3122 415 PANTHER WDSAM1 PROTEIN 9 415 IPR045185 GO:0061630
Tpr3g3122 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Tpr3g3122 415 CDD RING-Ubox_PUB 18 60 IPR045210 -
Tpr3g3122 415 Gene3D - 95 403 IPR011989 -
Tpr3g3122 415 SUPERFAMILY ARM repeat 98 397 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3122 Tpr-Chr3 34334038 34335534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3122 9 415 U-box Gene Family AT5G64660 50.714 5.29e-138 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3122 - - gmx:100799627 545.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3122 3 34334038 34335534 Tpr3g3122 3 34334038 34335534 ECH
Tpr3g3122 3 34334038 34335534 Tpr3g0838 3 7913574 7915304 ECH
Tpr3g0838 3 7913574 7915304 Tpr3g3122 3 34334038 34335534 PCT