Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3098 ATGAATACTGCTTTCGATATGCTTGGTGTTGTTAGTCCTGGAAGGGAATCATGGCGCTTTAAGGTGCGTGTGCTTCGTCTCTGGACTACTTCGTCTTTCCTCCAACCTGAAGTGGTGAACACACTTGAGATGGTTCTCATTGATGAAAAGGGCGTTAAAATTCATGCCAGTGTTCGTCGCCAGTTGCTATATTTATTTCAGTCTAAAATTAGTGAAGGAAATGTTTACAAGATGTCATACTTTACTGTTTCCCCTGCTTCTGGTTTTTACCGAACCACTCCTCACCCCTATAAGCTTGTGTTTCAATTGAAAACGAAGGTTCAAGTTTCTGAAAGCAACAAGATTGATCTGTATGGATTGTCCCTTACCAAGATATCTGATATCCACAGTGAAGTAGCTGCTCCTGAGTTTTTAGTTGATGTTATTGGGGTGATTACTGGAATGTCTGCTGACAGGGAATACATTCGTGATGGAAAAGTTGTTAAGATGATTGTGTTTGAGTTGACTGATCAGAGTGGAAAATGTGAATGTGCCTTATTTGGTGATTATGTCCATTCACTTCAAAGTATGCTCGGAAAGGCGCATAATGGGTTGCCGGTTGTTGTAGTTCAATTTGCGAAAATTAAAACTTTCAGAGGGAGTATATCAATTCAAAATATTATAAATGCTACAAGGCTATTTGTTAATCCTGCTATTGAAGAGGCTGATGCATTAAAAAATGGGATTGCTGCTAATGGGATTGAAACACCCTCAACAATTCCTTTGCTCGGTGCTCGAGCTAAACCTTCATATGAGGAAGATTTTCTGTTGAACTATCCCAAAATAACTATAGCTGAGTTGGTTGAAAAGGCTGAAGACGGTGTGTATGTTGTATGTGCTGTTGTCGATGGTCTGGTCGAGGGTGAGGACTGGTGGTATCCAGCTTGCAATTGTCATAGGAGTGTGGTTGCTGATTCTGGTGCCTATTACTGTAAAGTTTGTGTCAAGCATGTTTACCAGATGTTTCCCAGCTTGAAATTATGCAGGTACAAGGTTAAGTTTCGTGTTGCAGATTCAACTGGAAATGCTGTTTTCGTTGTTTTTGACAGTGACATGCGATTGCTTATTCATAAGGATTGTAGTGATGTGGTTGCTGCCTTCAAGCCTGAATCATCAATTGAGTATCCTACTGATTTTAAGCTGCTCAAAGGGATGAGGCTATTGTTTAAGGTTGAAAAGGTTACAAATGCTTTTGAGCAGTTTGATGTTTCATATAAGGTTAAGCGTGTGTGCAATGAGCTATCTACGATTGAGGCTTTTGGTGTTCCGGAAGTGACCAACAGTCCTACCAGGGTGTTGTCAAGTGGTTTTTCGGAATCTGAAGACGAGTCTGATATGGAGCATGAATTTGTTGAAGATTCTCTGAATCGTGATATTGTGGTGCAAGGTGATGGCGACGCTGGTTGTGCTGGATCGTTGGAAGCTGTTCATGTTAAGGATTCCGTTGTTGATTCGGCTGGTGAAGTTATAAGTTTGGACGATGACTCTGATGCTGGAATCACAGAGTTTGTCTCTGCTGCATCTAAGCTTGCAAAGGATGCAAAGTTGTTCGCTGTTAAGAGAAACCTGTCTTCTGCTTTTGCGGAGTGTAATGATATAGGAGAATCAAGCAATCCATCAAAGTGTTTGAAGACTAAGGAAGAATGA 1686 0.4093 MNTAFDMLGVVSPGRESWRFKVRVLRLWTTSSFLQPEVVNTLEMVLIDEKGVKIHASVRRQLLYLFQSKISEGNVYKMSYFTVSPASGFYRTTPHPYKLVFQLKTKVQVSESNKIDLYGLSLTKISDIHSEVAAPEFLVDVIGVITGMSADREYIRDGKVVKMIVFELTDQSGKCECALFGDYVHSLQSMLGKAHNGLPVVVVQFAKIKTFRGSISIQNIINATRLFVNPAIEEADALKNGIAANGIETPSTIPLLGARAKPSYEEDFLLNYPKITIAELVEKAEDGVYVVCAVVDGLVEGEDWWYPACNCHRSVVADSGAYYCKVCVKHVYQMFPSLKLCRYKVKFRVADSTGNAVFVVFDSDMRLLIHKDCSDVVAAFKPESSIEYPTDFKLLKGMRLLFKVEKVTNAFEQFDVSYKVKRVCNELSTIEAFGVPEVTNSPTRVLSSGFSESEDESDMEHEFVEDSLNRDIVVQGDGDAGCAGSLEAVHVKDSVVDSAGEVISLDDDSDAGITEFVSAASKLAKDAKLFAVKRNLSSAFAECNDIGESSNPSKCLKTKEE* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3098 561 CDD RPA1_DBD_B_like 140 239 - -
Tpr3g3098 561 Gene3D - 114 249 IPR012340 -
Tpr3g3098 561 Pfam Domain of unknown function DUF223 43 131 IPR003871 -
Tpr3g3098 561 PANTHER REPLICATION FACTOR A 1, RFA1 22 377 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr3g3098 561 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 377 - -
Tpr3g3098 561 SUPERFAMILY Nucleic acid-binding proteins 273 423 IPR012340 -
Tpr3g3098 561 SUPERFAMILY Nucleic acid-binding proteins 9 111 IPR012340 -
Tpr3g3098 561 CDD RPA1_DBD_C 280 423 IPR013955 -
Tpr3g3098 561 CDD RPA1_DBD_A_like 21 107 - -
Tpr3g3098 561 Pfam Replication factor-A C terminal domain 293 412 IPR013955 -
Tpr3g3098 561 SUPERFAMILY Nucleic acid-binding proteins 120 246 IPR012340 -
Tpr3g3098 561 Gene3D - 7 109 IPR012340 -
Tpr3g3098 561 Gene3D - 268 432 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3098 Tpr-Chr3 34090757 34093838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3098 11 404 Core DNA Replication Machinery Family AT5G08020 23.855 2.75e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3098 - - mtr:MTR_8g062030 471.085