Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3091 ATGGATTTCGACGAGTACGATTACTTGGAGAAGACAGTGGAGGAACAACAAGAAGACAGAGATTCTTCTAAGAAGAAGAGAGAAAGTAGCGACAAAACCGAAAAGAGTTACAGAAAGCGCGATGAGATCGAAGATGGAACCGAAGAGAAGCGGAGCAAGAGGTCCAGCGGCGGCGATGACGAGCATGTTTCCAGGAAGGATAGAGATCGTGATGATGACCGCGATAAGGAGCGTCATAGGAGTGGCAGAGATAGGGATAGGGATAGAGATAGAGAGAGTGAGAGGAGTAGCAGAGATAGAGACAGAGATAGGGAGAAGGATAGGGACAGAGAGAGAGATAGGGATAGGAGAGATAAGGACAAAGAGAGGGAGAGGAGGGATAGGGAGAGGGAGAAGGAGAAGGAAAGGGAGAGAGAAAGGTCCCGGAGGAGTAAGAGTCGTTCTGAGAGAGATAGAGAGATAGAACGAGAGGAGAAAGAGAGGTCTCGGAGAAGCATAAGTCGTTCTGAACGAGAAAGGGATCGAGAACGGGAGGAGAGAGAGAGGTCCAGGAGGAGCAGAAGTCGTTCTGAGCGCGATTTGGATAGAGATAGCCGGAGATTTAGGGACAAGAAAGAAGCAGCGGAGCCTGAGGCAGATCCAGAAAGGGATCAAAGAACTGTTTTTGCCTATCAGATGCCCTTAAAGGCAACAGAAAGGGATGTTTATGAATTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTTCGTCTGATAATGGACAGGAACTCAAGACGATCTAAAGGAGTGGGGTATATTGAATTTTATGATGCAATGTCGGTGCCAATGGCAATTGCTCTCTCCGGCCAACTTCTTCTTGGACAACCTGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTAGTTCAATCTAATACTACTAGTGGAGCTGCTGGTGTGACAGGACCATATGGAGCTGTGGACAGAAAACTTTATGTGGGGAACCTTCACTTCAATATGACTGAGAGCCAGTTGAGGGAGATTTTTGAGCCATTTGGTACTGTGGAGGTTGTGCAACTGCCTCTTGACCTTGAGACAGGACATTGCAAGGGTTTTGGGTTTATTCAATTTGCCCATCTAGAGCATGCCAAGGCTGCCCAGAGTTTAAATGGAAAATTGGAAATTGCTGGCCGAACTATCAAGGTTTCATCTGTAGCAGACCATGTTGGAAGCCAAGATACAACAGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGACTGGCTTTAAATGCCCAATCAAGAGCATTGCTTATGCAGAAGCTGGATCGCTCTGGAATTGCTGCAAGCATTGGTTTACCTATAAATGGGTCAGCTCCTGCTCCACAAGCATTTAGTTTGCCTATTAGTAATCCTGGATTAATACCAGCACTAGGTCTACCAAATCAAATTATGCCTACCCAAGTTGCCGAACCTGTCGGAACCCCCAGCAACTGTTTACTGTTGAAGAATATGTTTGATCCAACCACTGAGACAGAGCCAGATTTTGATCTAGACATTAAAGAAGATGTAGAAGAAGAGTGTTCTAAATATGGGCGGGTGAAGCATATCTATGTTGACAAAAACAGTGCTGGTTTTGTGTATTTGATGTTTGAAACGGTGGAAGCAGCAAGTGCTGCTCAGCGTGCAATGCACATGAGGTGGTTTGCACGCAAAATGATTTCAGCTATATACATGCAACCTCAGGTATATGAAGCCAAGTTTAAAGGGGAAGTTTGA 1755 0.4553 MDFDEYDYLEKTVEEQQEDRDSSKKKRESSDKTEKSYRKRDEIEDGTEEKRSKRSSGGDDEHVSRKDRDRDDDRDKERHRSGRDRDRDRDRESERSSRDRDRDREKDRDRERDRDRRDKDKERERRDREREKEKERERERSRRSKSRSERDREIEREEKERSRRSISRSERERDREREERERSRRSRSRSERDLDRDSRRFRDKKEAAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSGAAGVTGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVADHVGSQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPINGSAPAPQAFSLPISNPGLIPALGLPNQIMPTQVAEPVGTPSNCLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNSAGFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPQVYEAKFKGEV* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3091 584 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 177 - -
Tpr3g3091 584 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 157 584 - -
Tpr3g3091 584 Coils Coil 152 186 - -
Tpr3g3091 584 PANTHER CC1-LIKE SPLICING FACTOR 1 177 - -
Tpr3g3091 584 PANTHER CC1-LIKE SPLICING FACTOR 157 584 - -
Tpr3g3091 584 Gene3D - 317 413 IPR012677 -
Tpr3g3091 584 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 414 508 IPR029123 -
Tpr3g3091 584 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 296 IPR000504 GO:0003723
Tpr3g3091 584 Gene3D - 485 583 IPR012677 -
Tpr3g3091 584 CDD RRM2_RBM23_RBM39 323 395 - -
Tpr3g3091 584 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 321 399 IPR000504 GO:0003723
Tpr3g3091 584 Gene3D - 147 307 IPR012677 -
Tpr3g3091 584 CDD RRM3_RBM39_like 489 571 - -
Tpr3g3091 584 MobiDBLite consensus disorder prediction 13 218 - -
Tpr3g3091 584 TIGRFAM SF-CC1: splicing factor, CC1-like family 98 580 IPR006509 GO:0003723|GO:0005634|GO:0006397
Tpr3g3091 584 CDD RRM1_RBM39_like 220 292 - -
Tpr3g3091 584 SMART rrm1_1 220 292 IPR000504 GO:0003723
Tpr3g3091 584 SMART rrm1_1 322 395 IPR000504 GO:0003723
Tpr3g3091 584 SMART rrm1_1 491 568 IPR000504 GO:0003723
Tpr3g3091 584 SUPERFAMILY RNA-binding domain, RBD 321 573 IPR035979 GO:0003676
Tpr3g3091 584 MobiDBLite consensus disorder prediction 1 219 - -
Tpr3g3091 584 Coils Coil 6 26 - -
Tpr3g3091 584 Coils Coil 112 139 - -
Tpr3g3091 584 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 323 393 IPR000504 GO:0003723
Tpr3g3091 584 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 513 564 IPR000504 GO:0003723
Tpr3g3091 584 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 288 IPR000504 GO:0003723
Tpr3g3091 584 SUPERFAMILY RNA-binding domain, RBD 212 300 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3091 Tpr-Chr3 34003792 34012018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3091 293 394 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 7.47e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3091 K13091 - gmx:100802446 683.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0865 3 8132069 8138036 Tpr3g3091 3 34003792 34012018 PCT