Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3079 ATGGAATTAGCCGGTAAACTCCACCACCTCGACCTCACCGGAGCATTCATTCTAGACTCACGACGTCTACCACGCACCCTAACTCACACTCATCTCACCCCTAAACCCAACACTAACACTAATTTAGTTTATCCCAATCGATTCTTTATCAAAAAACCTAATTACACTTCACGTTTATCCGCTGTAACAGCGGTCGACGATACTCCAATAGCAGAAGACGATATCGAATCTCTATTTTCCAATACTTCAACCGATGAACGACGCGGCAAGAATAAACAATCGAGTACAGGAGCTTCCAGCGTTTCGTCTGGTGTGAAGTTGGAAAATATAAGTAAAACTTATAAAGGTGTTACGGTTTTGAAAGAGGTTAATTGGGAAGTGAAAAAAGGAGAGAAAGTTGGTTTGGTTGGTGTAAATGGTGCGGGGAAAACGACTCAAATGAGGATTATTGCTGGTCTTGAAGAACCGGATTCGGGAAATGTGATAAAAGCGAAACCGAATATGAAAATTGCGTTTTTGAGTCAAGAATTTGAGGTGTCACAGAGTAGGACTGTGAGGGAGGAGTTCATGAGTGCTTTTAAAGAGGAAATGGAAGTTGCTGGAAGGTTGGAGAAAGTGCAGAAGGCTCTTGAGGGTTCTGTTAATGATTTGGAATTGATGGGGAGGCTTTTGGATGAGTTTGATTTGCTTCAGAGACGAGCACAAGCTGTGAATTTGGATGTTGTTGATTCGAAGATTAGTAAATTGATGCCCGAGCTTGGTTTTGGTACCGAGGATTCGGATAGGTTGGTTGCTTCTTTTAGTGGTGGATGGCAGATGAGGATGTGTCTTGGCAAGATTCTACTTCAGGAACCAGATTTGTTGTTGTTAGATGAACCGACTAATCACCTTGATCTTGACACCATTGAGTGGCTTGAAGAATATCTTAACAAGCAGGATGTGCCGATGGTTATCATTTCCCATGACAGAGCTTTTCTCGATCAACTATGTACAAAAATTGTGGAAACTGACATGGGTGTATCCAGGACATTTGAGGGAAATTATTCTCAGTATATACTTTCAAAGGCAACTTGGATTGAAACACAGTATGCTGCATGGGAGAAGCAGCAGAAAGAAATTGAACATACAAGAGAATTGATAAGTAGGTTAGGTGCCGGAGCAAGTTCGGGCCGCGCTTCTTCCGCTGAGAAGAAATTGGAAAAACTTCTGGGAGAGGAACTAATAGAGAAGCCATTTGAACGGAAACAAATGAAAATCAGGTTCCCTGTGCGTGGAAGCAGTGGTAGATCTGTTGTAACAGTTAGGAACTTGGATTTTGGATTTGAGGATAAAACACTTTTCAACAAGGCAAATCTTACACTTGAAAGGGGAGAAAAGGTTGCCATTCTCGGTCCAAATGGATGTGGCAAGAGTACTTTACTAAAATTGATTATGGGTTTAGAGAAGCCAACTGGCGGTGAAGTTATCCTTGGGGAGCACAATGTATTGCCTAACTATTTTGAGCAGAATCAGGCTGAGGCGCTTGATCTGGAAAAGACAGTGCTTCAGACAGTAGAGGAAGCTGCAGAGGACTGGAGGAGTGACGATATTAAAGGACTTCTTGGGCGTTGTAATTTTAAATCTGATATGCTTGATCGTAAAGTTTCTCTATTGAGTGGTGGTGAGAAGGCACGATTGGCTTTCTGCAAATTCATGGTAAAACCATCAACTCTGCTTGTTTTGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTTGAGGAGGCAATATCAGAGTATGAGGGCACTGTTATCACAGTATCTCATGATCGGTACTTTATAAAGCAGATAGTTAATAGAGTGATTGAAGTAAAAGATTGCGATTTACAGGATTATGCTGGAGATTATAATTATTATTTGGAGAAGAATCTTGATGCTAGGGAAAAGGAGCTTGAACGCCAGGCAGAGCTTGAGGACAAAGCTCCTAAATTGAAAGCCAAATCTAAGATGTCCAAGGCTGAGAAAGAAGCAAGGAAGAAGCAAAAGATGCAGGCCTTTCAGGCAGGAAAACAGAAGTCTAAAAGTGCAAAAAACTCAAAGAGATGGAATTGA 2100 0.4143 MELAGKLHHLDLTGAFILDSRRLPRTLTHTHLTPKPNTNTNLVYPNRFFIKKPNYTSRLSAVTAVDDTPIAEDDIESLFSNTSTDERRGKNKQSSTGASSVSSGVKLENISKTYKGVTVLKEVNWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEEPDSGNVIKAKPNMKIAFLSQEFEVSQSRTVREEFMSAFKEEMEVAGRLEKVQKALEGSVNDLELMGRLLDEFDLLQRRAQAVNLDVVDSKISKLMPELGFGTEDSDRLVASFSGGWQMRMCLGKILLQEPDLLLLDEPTNHLDLDTIEWLEEYLNKQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYILSKATWIETQYAAWEKQQKEIEHTRELISRLGAGASSGRASSAEKKLEKLLGEELIEKPFERKQMKIRFPVRGSSGRSVVTVRNLDFGFEDKTLFNKANLTLERGEKVAILGPNGCGKSTLLKLIMGLEKPTGGEVILGEHNVLPNYFEQNQAEALDLEKTVLQTVEEAAEDWRSDDIKGLLGRCNFKSDMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYEGTVITVSHDRYFIKQIVNRVIEVKDCDLQDYAGDYNYYLEKNLDAREKELERQAELEDKAPKLKAKSKMSKAEKEARKKQKMQAFQAGKQKSKSAKNSKRWN* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3079 699 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 432 647 IPR003439 GO:0005524
Tpr3g3079 699 SMART AAA_5 129 344 IPR003593 -
Tpr3g3079 699 SMART AAA_5 456 624 IPR003593 -
Tpr3g3079 699 CDD ABCF_EF-3 105 335 - -
Tpr3g3079 699 Gene3D - 102 386 IPR027417 -
Tpr3g3079 699 Gene3D - 395 660 IPR027417 -
Tpr3g3079 699 Pfam ABC transporter 334 421 IPR032781 -
Tpr3g3079 699 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 411 635 IPR027417 -
Tpr3g3079 699 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 35 689 - -
Tpr3g3079 699 Coils Coil 643 679 - -
Tpr3g3079 699 Pfam ABC transporter 448 579 IPR003439 GO:0005524
Tpr3g3079 699 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 105 363 IPR003439 GO:0005524
Tpr3g3079 699 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 340 IPR027417 -
Tpr3g3079 699 ProSitePatterns ABC transporters family signature. 551 565 IPR017871 GO:0005524
Tpr3g3079 699 ProSitePatterns ABC transporters family signature. 267 281 IPR017871 GO:0005524
Tpr3g3079 699 PANTHER ABC TRANSPORTER F FAMILY MEMBER 5 35 689 - -
Tpr3g3079 699 Pfam ABC transporter 120 295 IPR003439 GO:0005524
Tpr3g3079 699 MobiDBLite consensus disorder prediction 77 102 - -
Tpr3g3079 699 MobiDBLite consensus disorder prediction 649 679 - -
Tpr3g3079 699 CDD ABCF_EF-3 432 622 - -
Tpr3g3079 699 MobiDBLite consensus disorder prediction 649 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3079 Tpr-Chr3 33633863 33639783 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3079 429 649 Calmodulin-binding Proteins AT2G36910 25.101 4.76e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3079 - - gmx:100796907 1077.39