Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3063 ATGGATTTCGACGAGTACGATTACTTGGAGAAGACAGTGGAGGAACAACAAGAAGACAAAGATTCTTCTAAGAAGAAGAGAGAAAGTAGCGACAAAACCGAAAAGAGTTACAGAAAGCGCGATGAGATCGAAGATGGAACCGAAGAGAAGCGGAGCAAGAGGTCCAGCGGCGGCGATGACGAGCATGTTTCCAGGAAGGATAGAGATCGTGATGATGACCGCGATAAGGAGCGTCATAGGAGTGGCAGAGATAGGGATAGAGATAGAGAGAGTGAGAGGAGTAGCAGAGATAGAGACAGAGATAGGGAGAAGGATAGGGACAGAGAGAGAGATAGGGATAGGAGAGATAAGGACAAAGAGAGGGAGAGGAGGGATAGGGAGAGGGAGAAGGAGAAGGAAAGGGAGAGAGAAAGGTCCCGGAGGAGTAAGAGTCGTTCTGAGAGAGATAGAGAGATAGAACGAGAGGAGAAAGAGAGGTCTCGGAGAAGCATAAGTCGTTCTGAACGAGAAAGGGAGAGAGAACGGGAGGAGAGAGAGAGGTCCAGGAGGAGCAGAAGTCGTTCTGAGCGCGATTTGGATAGAGATAGCCGGAGATTTAGGGACAAGAAAGAAGCAGCGGAGCCTGAGGCAGATCCAGAAAGGGATCAAAGAACTGTTTTTGCCTATCAGATGCCCTTAAAGGCAACAGAAAGGGATGTTTATGAATTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTTCGTCTGATAATGGACAGGAACTCAAGACGATCTAAAGGAGTGGGGTATATTGAATTTTATGATGCAATGTCGGTGCCAATGGCAATTGCTCTCTCCGGCCAACTTCTTCTTGGACAACCTGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTAGTTCAATCTAATACTACTAGTGGAGCTGCTGGTGTGACAGGACCATATGGAGCAGTGGACAGAAAACTTTATGTGGGGAACCTTCACTTCAATATGACTGAGAGCCAGTTGAGGGAGATTTTTGAGCCATTTGGTACTGTGGAGGTTGTGCAACTGCCTCTTGACCTTGAGACAGGACATTGCAAGGGTTTTGGGTTTATTCAATTTGCCCATCTAGAGCATGCCAAGGCTGCCCAGAGTTTAAATGGAAAATTGGAAATTGCTGGCCGAACTATCAAGGTTTCATCTGTAGCAGACCATGTTGGAAGCCAAGATACAACAGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGACTGGCTTTAAATGCCCAATCAAGAGCATTGCTTATGCAGAAGCTGGATCGCTCTGGAATTGCTGCAAGCATTGGTTTACCTATAAATGGGTCAGCTCCTGCTCCACAGGCATTTAGTTTGCCTATTAGTAATCCTGGATTAATACCAGCACTAGGTCTACCAAATCAAATTATGCCTACCCAAGTTGCCGAACCTGTCGGAACCCCCAGCAACTGTTTACTGTTGAAGAATATGTTTGATCCAACCACTGAGACAGAGCCAGATTTTGATCTAGACATTAAAGAAGATGTAGAAGAAGAGTGTTCTAAATATGGGAGGGTGAAGCATATCTATGTTGACAAAAACAGTGCTGGTTTTGTGTATTTGATGTTTGAAACGGTGGAAGCAGCAAGTGCTGCTCAGCGTGCAATGCACATGAGGTGGTTTGCACGCAAAATGATTTCAGCTATATACATGCAACCTCAGGTATATGAAGCCAAGTTTAAAGGGGAAGTTTGA 1749 0.4545 MDFDEYDYLEKTVEEQQEDKDSSKKKRESSDKTEKSYRKRDEIEDGTEEKRSKRSSGGDDEHVSRKDRDRDDDRDKERHRSGRDRDRDRESERSSRDRDRDREKDRDRERDRDRRDKDKERERRDREREKEKERERERSRRSKSRSERDREIEREEKERSRRSISRSEREREREREERERSRRSRSRSERDLDRDSRRFRDKKEAAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSGAAGVTGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVADHVGSQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPINGSAPAPQAFSLPISNPGLIPALGLPNQIMPTQVAEPVGTPSNCLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNSAGFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPQVYEAKFKGEV* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3063 582 CDD RRM3_RBM39_like 487 569 - -
Tpr3g3063 582 CDD RRM1_RBM39_like 218 290 - -
Tpr3g3063 582 Gene3D - 315 411 IPR012677 -
Tpr3g3063 582 Coils Coil 110 137 - -
Tpr3g3063 582 Gene3D - 483 581 IPR012677 -
Tpr3g3063 582 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 412 506 IPR029123 -
Tpr3g3063 582 PANTHER CC1-LIKE SPLICING FACTOR 155 582 - -
Tpr3g3063 582 PANTHER CC1-LIKE SPLICING FACTOR 1 154 - -
Tpr3g3063 582 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 319 397 IPR000504 GO:0003723
Tpr3g3063 582 Gene3D - 147 303 IPR012677 -
Tpr3g3063 582 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 155 582 - -
Tpr3g3063 582 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 154 - -
Tpr3g3063 582 TIGRFAM SF-CC1: splicing factor, CC1-like family 98 578 IPR006509 GO:0003723|GO:0005634|GO:0006397
Tpr3g3063 582 MobiDBLite consensus disorder prediction 1 218 - -
Tpr3g3063 582 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 294 IPR000504 GO:0003723
Tpr3g3063 582 Coils Coil 150 191 - -
Tpr3g3063 582 SUPERFAMILY RNA-binding domain, RBD 319 571 IPR035979 GO:0003676
Tpr3g3063 582 SMART rrm1_1 218 290 IPR000504 GO:0003723
Tpr3g3063 582 SMART rrm1_1 320 393 IPR000504 GO:0003723
Tpr3g3063 582 SMART rrm1_1 489 566 IPR000504 GO:0003723
Tpr3g3063 582 Coils Coil 6 26 - -
Tpr3g3063 582 MobiDBLite consensus disorder prediction 13 216 - -
Tpr3g3063 582 SUPERFAMILY RNA-binding domain, RBD 210 298 IPR035979 GO:0003676
Tpr3g3063 582 CDD RRM2_RBM23_RBM39 321 393 - -
Tpr3g3063 582 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 511 562 IPR000504 GO:0003723
Tpr3g3063 582 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 224 286 IPR000504 GO:0003723
Tpr3g3063 582 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 321 391 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3063 Tpr-Chr3 33492750 33501100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3063 291 392 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 7.06e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3063 K13091 - gmx:100802446 683.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0865 3 8132069 8138036 Tpr3g3063 3 33492750 33501100 ECH
Tpr3g3063 3 33492750 33501100 Tpr3g3063 3 33492750 33501100 ECH