Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3061 ATGTGTATGTTAAAGGTGGCGAATTCAAGAGACAAAGTTGTTATCAAAAGGGAAAATATAAATGATTCTCCCACATTGTCAACTGAAATGATATTTCCAGGTTTGAATAGAGATAGAGAAATGTCTGCAATGATCTCAGCTTTGACTCATATTGTCTCTGGAGATGTTCCAAACACAAACGTTGGTGATAATAATATTCATTATAATGCAATTGATGAAAGGCTTGGTTTTACAACAAACATCAACATGTCTTCCTCTTCTACAACTCCTTCTTTGTCTTCTTCATCTAATTATGTTACTAATTCTTCTCTTAAGAGAACTAGGGATGAAGATGAAGATAGATCCTTTGGTGATCAATTCTTGCTCCAAGGCGGTTACTCCCCTGCTTTGCCAACAAATGCAGAAAGTTCAAGAAATAGGACAACAACAACGAGAGTAACAACAGCAAGAGAAATGGGAAATGCAGTATATGAATATAAAAGAACAGAGAATGTAGTAAGAGAAGGAGAAGAGAAGAGAAAATACAGAGGAGTAAGACAGAGACCATGGGGAAAATGGGCTGCAGAGATAAGAGATCCATTCAAAGCAGCAAGAGTTTGGTTAGGTACATTTGAAACTGCTGAAGCAGCTGCTAGAGCATATGATGAAGCTGCTCTTCGTTTTCGAGGCAACAAAGCTAAACTCAATTTCCCTGAAAATGTTACTCTTCGTCAACCTCCAACAACTAGTAGTACTAATCAATCGAATGTTTTGAATTCGAATTCTCTAAATTCGATTGTTTCTATTACAACTTCCACTGACCCTGTTGTTCATACTAGGCCTTTTACTTCTTCTTCTCAACCTTCAACTAATTTTTATGATCGGTTTCAGTTTCCGGGTATTCCTTCTACAAGGAATGTTTATGATGATAATGTGATTTTGACGTCTACAATGGCTTCCCATCTTCAATCTTCGTCGTCATCAGCTTCTTCTTTGTCATCTCCTTCTGCATATGCTTCTTCTATGCAGGCGAATACTTCGGTTTCTTCGTTTTATTCTACCCAGTTGCCTCCGTGGTCGGCTTCGGATCATAGCTCTTCTTCCTCTAGATGA 1092 0.38 MCMLKVANSRDKVVIKRENINDSPTLSTEMIFPGLNRDREMSAMISALTHIVSGDVPNTNVGDNNIHYNAIDERLGFTTNINMSSSSTTPSLSSSSNYVTNSSLKRTRDEDEDRSFGDQFLLQGGYSPALPTNAESSRNRTTTTRVTTAREMGNAVYEYKRTENVVREGEEKRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGNKAKLNFPENVTLRQPPTTSSTNQSNVLNSNSLNSIVSITTSTDPVVHTRPFTSSSQPSTNFYDRFQFPGIPSTRNVYDDNVILTSTMASHLQSSSSSASSLSSPSAYASSMQANTSVSSFYSTQLPPWSASDHSSSSSR* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3061 363 CDD AP2 174 233 IPR001471 GO:0003700|GO:0006355
Tpr3g3061 363 Gene3D AP2/ERF domain 173 233 IPR036955 GO:0003700|GO:0006355
Tpr3g3061 363 Pfam AP2 domain 174 223 IPR001471 GO:0003700|GO:0006355
Tpr3g3061 363 SUPERFAMILY DNA-binding domain 174 232 IPR016177 GO:0003677
Tpr3g3061 363 ProSiteProfiles AP2/ERF domain profile. 174 231 IPR001471 GO:0003700|GO:0006355
Tpr3g3061 363 SMART rav1_2 174 237 IPR001471 GO:0003700|GO:0006355
Tpr3g3061 363 MobiDBLite consensus disorder prediction 86 103 - -
Tpr3g3061 363 PRINTS Ethylene responsive element binding protein signature 175 186 IPR001471 GO:0003700|GO:0006355
Tpr3g3061 363 PRINTS Ethylene responsive element binding protein signature 197 213 IPR001471 GO:0003700|GO:0006355
Tpr3g3061 363 MobiDBLite consensus disorder prediction 86 115 - -
Tpr3g3061 363 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 36 360 - -
Tpr3g3061 363 PANTHER DNA-BINDING DOMAIN 36 360 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3061 Tpr-Chr3 33475334 33477778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3061 172 247 AP2-EREBP Transcription Factor Family AT5G61890 77.632 2.37e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr3g3061 AP2 2.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3061 - - mtr:MTR_3g095190 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3061 3 33475334 33477778 Tpr3g3061 3 33475334 33477778 ECH
Tpr3g0868 3 8153843 8155385 Tpr3g3061 3 33475334 33477778 ECH