LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr3g3061	ATGTGTATGTTAAAGGTGGCGAATTCAAGAGACAAAGTTGTTATCAAAAGGGAAAATATAAATGATTCTCCCACATTGTCAACTGAAATGATATTTCCAGGTTTGAATAGAGATAGAGAAATGTCTGCAATGATCTCAGCTTTGACTCATATTGTCTCTGGAGATGTTCCAAACACAAACGTTGGTGATAATAATATTCATTATAATGCAATTGATGAAAGGCTTGGTTTTACAACAAACATCAACATGTCTTCCTCTTCTACAACTCCTTCTTTGTCTTCTTCATCTAATTATGTTACTAATTCTTCTCTTAAGAGAACTAGGGATGAAGATGAAGATAGATCCTTTGGTGATCAATTCTTGCTCCAAGGCGGTTACTCCCCTGCTTTGCCAACAAATGCAGAAAGTTCAAGAAATAGGACAACAACAACGAGAGTAACAACAGCAAGAGAAATGGGAAATGCAGTATATGAATATAAAAGAACAGAGAATGTAGTAAGAGAAGGAGAAGAGAAGAGAAAATACAGAGGAGTAAGACAGAGACCATGGGGAAAATGGGCTGCAGAGATAAGAGATCCATTCAAAGCAGCAAGAGTTTGGTTAGGTACATTTGAAACTGCTGAAGCAGCTGCTAGAGCATATGATGAAGCTGCTCTTCGTTTTCGAGGCAACAAAGCTAAACTCAATTTCCCTGAAAATGTTACTCTTCGTCAACCTCCAACAACTAGTAGTACTAATCAATCGAATGTTTTGAATTCGAATTCTCTAAATTCGATTGTTTCTATTACAACTTCCACTGACCCTGTTGTTCATACTAGGCCTTTTACTTCTTCTTCTCAACCTTCAACTAATTTTTATGATCGGTTTCAGTTTCCGGGTATTCCTTCTACAAGGAATGTTTATGATGATAATGTGATTTTGACGTCTACAATGGCTTCCCATCTTCAATCTTCGTCGTCATCAGCTTCTTCTTTGTCATCTCCTTCTGCATATGCTTCTTCTATGCAGGCGAATACTTCGGTTTCTTCGTTTTATTCTACCCAGTTGCCTCCGTGGTCGGCTTCGGATCATAGCTCTTCTTCCTCTAGATGA	1092	0.38	MCMLKVANSRDKVVIKRENINDSPTLSTEMIFPGLNRDREMSAMISALTHIVSGDVPNTNVGDNNIHYNAIDERLGFTTNINMSSSSTTPSLSSSSNYVTNSSLKRTRDEDEDRSFGDQFLLQGGYSPALPTNAESSRNRTTTTRVTTAREMGNAVYEYKRTENVVREGEEKRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGNKAKLNFPENVTLRQPPTTSSTNQSNVLNSNSLNSIVSITTSTDPVVHTRPFTSSSQPSTNFYDRFQFPGIPSTRNVYDDNVILTSTMASHLQSSSSSASSLSSPSAYASSMQANTSVSSFYSTQLPPWSASDHSSSSSR*	364

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Tpr3g3061	363	CDD	AP2	174	233	IPR001471	GO:0003700\|GO:0006355
Tpr3g3061	363	Gene3D	AP2/ERF domain	173	233	IPR036955	GO:0003700\|GO:0006355
Tpr3g3061	363	Pfam	AP2 domain	174	223	IPR001471	GO:0003700\|GO:0006355
Tpr3g3061	363	SUPERFAMILY	DNA-binding domain	174	232	IPR016177	GO:0003677
Tpr3g3061	363	ProSiteProfiles	AP2/ERF domain profile.	174	231	IPR001471	GO:0003700\|GO:0006355
Tpr3g3061	363	SMART	rav1_2	174	237	IPR001471	GO:0003700\|GO:0006355
Tpr3g3061	363	MobiDBLite	consensus disorder prediction	86	103	-	-
Tpr3g3061	363	PRINTS	Ethylene responsive element binding protein signature	175	186	IPR001471	GO:0003700\|GO:0006355
Tpr3g3061	363	PRINTS	Ethylene responsive element binding protein signature	197	213	IPR001471	GO:0003700\|GO:0006355
Tpr3g3061	363	MobiDBLite	consensus disorder prediction	86	115	-	-

Showing 1 to 10 of 12 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr3g3061	Tpr-Chr3	33475334	33477778	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr3g3061	172	247	AP2-EREBP Transcription Factor Family	AT5G61890	77.632	2.37e-35	128

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Tpr3g3061		AP2	2.8e-14	CL0081

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr3g3061	-		-	mtr:MTR_3g095190	408.683

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr3g3061	3	33475334	33477778	Tpr3g3061	3	33475334	33477778	ECH
	Tpr3g0868	3	8153843	8155385	Tpr3g3061	3	33475334	33477778	ECH

Showing 1 to 2 of 2 entries

Previous1Next