Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3022 ATGGCTCCATCAACAAGACAAGTTGAGGTTAAGAACAAAGGAAAATTTGTTACTGCTTATATCATTGATCAGCCATATGGTGAAATGAGTCCGAAAATTATTGAAAAGATTTATCATGAACTTGAAGAAGAAGTTGTTGTGTTTGATAGAGAAAACCGTTCCTTGAAAGTTAAGTTCAATCGATCAATTCAACATCCTCTTATTGTTGGTGGGTGGTCAGAAATGAGAGCTCATTATGGAATTGATAGAAACAGAATATTAGTCATGACTTATGTGGGTAAAAACCGTTTTATACTTGATTTTCTAAATCAAGAGTTTAATCCAAACAAGTTGCCTACTTACCATAGTTATTATCACTTTGCTGCTGATCCTGTGACATTTAATGTCACACTCACTCCTTATCTTGCTTCTGTCTCTCAGTTGTCCTTAAACAAAGACTTTGCTACCTACATAAGGAATTCTGGATTCGATAGTGTGGTTCTCTATGGTCCTCAAGGTGATGAGGTACCTTGCAAACTTGTGCTGAGGAATTCTAGAAATAAAGAGTACACAAAAATTGGTACAGGTTGGAAGAATTTCATTAATATAAATGGATTTGTTGCTGGAGATGTGCTCAACCTTAAGTTTGTCAACAAAGCAAATAGCAATTTGATGAAAGTTGTCAAAATCTAA 672 0.3482 MAPSTRQVEVKNKGKFVTAYIIDQPYGEMSPKIIEKIYHELEEEVVVFDRENRSLKVKFNRSIQHPLIVGGWSEMRAHYGIDRNRILVMTYVGKNRFILDFLNQEFNPNKLPTYHSYYHFAADPVTFNVTLTPYLASVSQLSLNKDFATYIRNSGFDSVVLYGPQGDEVPCKLVLRNSRNKEYTKIGTGWKNFININGFVAGDVLNLKFVNKANSNLMKVVKI* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3022 223 Pfam B3 DNA binding domain 128 215 IPR003340 GO:0003677
Tpr3g3022 223 Gene3D - 121 223 IPR015300 -
Tpr3g3022 223 Gene3D - 8 105 IPR015300 -
Tpr3g3022 223 SUPERFAMILY DNA-binding pseudobarrel domain 126 213 IPR015300 -
Tpr3g3022 223 Coils Coil 38 58 - -
Tpr3g3022 223 ProSiteProfiles B3 DNA-binding domain profile. 126 223 IPR003340 GO:0003677
Tpr3g3022 223 SMART B3_2 126 223 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3022 Tpr-Chr3 32655867 32656765 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3022 43 210 REM Transcription Factor Family AT1G26680 25.140 7.74e-09 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr3g3022 B3 5.3e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3022 - K07173 vun:114169435 99.3673