Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3013 ATGTCTCTCCATCAACGCCTCCATCGTCTCTTACTCGACACAGATTCAGCTTCAACAACTGCATCAGGTAACATGAATAAGCCAAGTGAATCTTTTGCAATCACAGGTGACTCAAATTTTGACTCCAACATGGTGTTTATCTTAGCAGCTTTACTTTGTACACTTATTTTAGTATTAGGACTCAACTCAATTATAAAGTGTGCTCTAAGATGTAGTCGCAGGTATGCTTTTGAAACCCAAGATCAAAGAATAGTGCGTTTAGCATCAAAGGGTTTAAAGAAGAGTGCGTTGCGAAAGATCCCTATAGTTGTTTATGGTTCAGGTAGTATTAGTTCTAGTTTTGTAGCCACAGATTGTCCAATTTGTCTTGGAGAGTTTATGGATGGTGAGAAAGTTAGAGTGTTACCAAAATGTAACCATGGATTTCATGTAAAGTGTATAGATAAATGGCTGCTTTCACACTCCTCTTGTCCTACTTGTAGACAGTCTTTGCTTGAGTATCCAGCTAGCTCTGAAGCTTCATCTGTAGCTGTGATTGTTGCTGCAGCTGTAGGGACAAATCAACGGCTTTAA 573 0.3927 MSLHQRLHRLLLDTDSASTTASGNMNKPSESFAITGDSNFDSNMVFILAALLCTLILVLGLNSIIKCALRCSRRYAFETQDQRIVRLASKGLKKSALRKIPIVVYGSGSISSSFVATDCPICLGEFMDGEKVRVLPKCNHGFHVKCIDKWLLSHSSCPTCRQSLLEYPASSEASSVAVIVAAAVGTNQRL* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3013 190 PANTHER RING-H2 FINGER PROTEIN ATL74 8 175 - -
Tpr3g3013 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 166 IPR013083 -
Tpr3g3013 190 CDD RING-H2_PA-TM-RING 118 161 - -
Tpr3g3013 190 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 8 175 - -
Tpr3g3013 190 Pfam Ring finger domain 118 161 IPR001841 -
Tpr3g3013 190 SMART FANCL_C_2 115 165 - -
Tpr3g3013 190 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Tpr3g3013 190 SUPERFAMILY RING/U-box 98 167 - -
Tpr3g3013 190 SMART ring_2 119 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3013 Tpr-Chr3 32545734 32548014 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3013 7 174 C3H Transcription Factor Family AT3G10910 54.237 2.38e-54 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3013 - K19040 mtr:MTR_3g094000 266.159