Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3012 ATGTCTCTCCGTCAAGGCCTCCACCGTCTTTTACTCGACACAAATTCACCTTCAAAAACTGCATCAGGTAACATGCATAAGCCAATGGGAAATTTCTATAGTACAGGTGACTTAAAATTTGACATACCGATGATGTTTATCTCATTTGCTTTAGCACTTATTTTTGTATTTGTACTCGACTATATCATAAGGTGTGCTCGTAGCCGTAGGTATGCTTTTGAGACACAAGATGAAATAATAGCTCGTTTAGCATCAAAGGATTTAAAAAATAGTGCATTGTGTAAGATCCCTATAGTTGTTTATGGTTCAGGTAGTATTAGTACTAGTTTTGTAGGCACAGATTGTCCAATTTGTCTTGGGGAGTTTATGGATGGGGAGAAAGTTAGAGTGTTGCCAAATTGTAACCATGGATTTCATGTAGAGTGTATAGATAAATGGCTGCTTTCACACTCCTCTTGTCCTACTTGTAGACAGTCTTTGCTTGAGTATCCAACTAGCTCTGAAGCTTCATCTGTAGCTGTGACTGTTGCTGCAGCTGTAGGGAACACAAATCAACGGCTTTAA 564 0.3883 MSLRQGLHRLLLDTNSPSKTASGNMHKPMGNFYSTGDLKFDIPMMFISFALALIFVFVLDYIIRCARSRRYAFETQDEIIARLASKDLKNSALCKIPIVVYGSGSISTSFVGTDCPICLGEFMDGEKVRVLPNCNHGFHVECIDKWLLSHSSCPTCRQSLLEYPTSSEASSVAVTVAAAVGNTNQRL* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3012 187 Pfam Ring finger domain 114 157 IPR001841 -
Tpr3g3012 187 PANTHER RING-H2 FINGER PROTEIN ATL74 8 175 - -
Tpr3g3012 187 SUPERFAMILY RING/U-box 114 163 - -
Tpr3g3012 187 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 8 175 - -
Tpr3g3012 187 CDD RING-H2_PA-TM-RING 114 157 - -
Tpr3g3012 187 SMART ring_2 115 156 IPR001841 -
Tpr3g3012 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 162 IPR013083 -
Tpr3g3012 187 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3012 Tpr-Chr3 32542531 32544196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3012 7 165 C3H Transcription Factor Family AT3G10910 47.399 4.07e-39 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3012 - K19040 mtr:MTR_3g094000 223.402