Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3009 ATGTCCTCCGATGACATCAATATCACTCCTGACCAGAGAATCGAAAACGGCCTAACCTCCCCTCTCGTCTTCCAAGACGACACTCTCCGTTTCAACTGCGGCGGTGCACCACAGAGACAAGTCGGTGATCGGGCTCCTAAAACCCGTGAAGTCGGCGGTTTCATAGATGACAAGATGTTCACCGTGAATCGCGATCGGTTTTTCACTTCCCAGGGTACGGAGTTCCGCCGGAACGTTTTCGCCGATCGGCCTGACCACAGGGATAGTTCAGATGTACTGAACTGGAGTGCCGAAACTCCAAGCAGTGATGATTCCGACGGGGAAGATGATGACGAAGACGATGATGGAGACACCACAGCTGATAGACTCGTTAGTATCGGTGACGACGGAAGCAAACGCAATTCCAATGCAATTATTGATGTTAACAATAACAATGGTGGCAGTGTTGTAAATGGGAAAGCTCAGCATCATTCTCCTTATGTTTCTAGTAGAGAGATATTGGGAAAGGATGGTGAAATTGTACAGTTGGTGCATAACAATGTGAGTGGCGCTACTGGTGAGGATCAACTGCGAGAAAGATTAGGTAAAACTCAGAACTCTGTAACCGTTGCTGAAACTGACTGTGAGGAGTACTATTCGCACTATCTTCAAGGTGGGGAAGGATCACCTTCTGTTCAAAAAGTTATGGTGGATGACAATGGCTGTGGGTTTAGTGGAAGAAAGGATGCCGGGTATTCAAGCGAGTCTGGGGAGTCATTGAGGTCGATTCTTTCGGATCCTGTTACTGGAACGCTTATGGATGATGCAATGATATTACCTTGCGGACATTCATTTGGTGGAGGTGGAATTCAGCATGTTATTAGAATGAAGGCTTGTTGTACTTGTTCTCAACCCACATTGGAGGAGTCAATATCTCCAAATCTTTCACTTCGAGATGCTGTGCAGGCATACCGCCGAGAAGAAGAATCACAATTTTACCGGTCATCCAAAAGAAAAAGAGAACGATTTGATCAGGGTGGTTTTGGAGAGTGTGCTGTTATTGAACCATCAAGGAGTAGAGGTGTTCAATTTCCATTTGCTGTGACGGACCGGGTTATCATAAAGGGGAACAAAAGAACACCACAACGCTTTGTTGGGCGTGAAGCTATTGTAACAACACAATGCCTGAATGGATGGTATGTGGTGAAGACGTTGGACAATGCAGAGAGTGTGAAATTGCAGTATCGCTCCCTTGCTAAGGTTTCCGACGATCCTTCAAAACCTGTCTCCAGTAACATGGGACCTAATTGGCTTCAGATTTGCCGAACAACATCATAA 1317 0.4609 MSSDDINITPDQRIENGLTSPLVFQDDTLRFNCGGAPQRQVGDRAPKTREVGGFIDDKMFTVNRDRFFTSQGTEFRRNVFADRPDHRDSSDVLNWSAETPSSDDSDGEDDDEDDDGDTTADRLVSIGDDGSKRNSNAIIDVNNNNGGSVVNGKAQHHSPYVSSREILGKDGEIVQLVHNNVSGATGEDQLRERLGKTQNSVTVAETDCEEYYSHYLQGGEGSPSVQKVMVDDNGCGFSGRKDAGYSSESGESLRSILSDPVTGTLMDDAMILPCGHSFGGGGIQHVIRMKACCTCSQPTLEESISPNLSLRDAVQAYRREEESQFYRSSKRKRERFDQGGFGECAVIEPSRSRGVQFPFAVTDRVIIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVSDDPSKPVSSNMGPNWLQICRTTS* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3009 438 MobiDBLite consensus disorder prediction 102 117 - -
Tpr3g3009 438 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 53 431 - -
Tpr3g3009 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 322 IPR013083 -
Tpr3g3009 438 ProSiteProfiles U-box domain profile. 252 324 IPR003613 GO:0004842|GO:0016567
Tpr3g3009 438 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 53 431 - -
Tpr3g3009 438 MobiDBLite consensus disorder prediction 79 117 - -
Tpr3g3009 438 SUPERFAMILY RING/U-box 248 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3009 Tpr-Chr3 32508446 32513438 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3009 200 431 Plant U-box Gene Family AT5G05230 62.762 1.94e-89 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3009 - - adu:107470194 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3009 3 32508446 32513438 Tpr3g3009 3 32508446 32513438 ECH