Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g3008 ATGGAAGTTTCATCCAAAATGAGAGTGTTTTTTGTGTGCTTGTTCTTGCTGTTTCTGGTGACTGTGACAGCTGTGAATCCGTCTTTAAACGATGACGTTTTGGGGTTGATTGTGTTCAAAGCGGATATACAAGATCCGAAGGGAAAGTTAGCATCTTGGAATGAAGATGATGAAAGTGCTTGTGGTGGTAGTTGGGTTGGAGTGAAATGTAACCCTAGATCCAATAGGGTTGTGGAGGTTAACCTTAATGGGTTCTCTTTATCTGGAAGGATTGGACGTGGTTTACAACGTTTACAATTTCTTCGTAGGCTTTATTTGGCGAATAATAATCTTACTGGGAGTATAACCCCTAATATTGCTACTATTGATAACCTTAGGGTTCTTGATTTGAGCAATAATAATCTTTCAGGGGTTGTTCCTGATGATTTTTTCCGGCAATGTGGGTCTATGAGAGCTGTTTCTTTGGCGGGGAACATGTTTTCAGGGAATGTTCCTTCCAGTATAGGTTCATGTTCAGCTATTGCTAGTATTGATTTGTCTGTTAACCAGTTTTCTGGTTCTGTTCCTAAGGAGATTTGGACTTTGAGTGGACTTAGGTCTCTTGATTTGTCTGATAATTTGTTGGAAGGTGAGGTTCCTGAAGGAGTTGAGGCGTTGAAGAATTTGCGGAGCATTAACTTGGCGAGAAATAGCTTTTCTGGGAAGATACCAGATGGGTTTGGAAGTTGTTTGCTTTTGAGGTCTATTGATTTTAGTGATAATTCTTTCTCCGGTAACATACCTAATGGTTTGAAGGAATTGGTGTTGTGTGGTTACTTTAGTTTGGGTGGAAACGCTTTCTCAGGAGATGTTCCTGAGTGGATTGGAGATATGAAAGGTCTTCAGACATTGGATCTTTCTCGGAATAGATTTTCTGGTTTGGTTCCAAACTCTTCAGGAAATCTTTGGTCATTGAAAACATTGAATCTTTCTGGAAATGGTTTCACTGGTAATCTTCCCGAGTCTATGGCAAATTGCACAAACCTCTTGGCCTTAGATGTTAGCCAGAATTCATTGTCTGGAGATCTTCCGTCGTGGATTTTCAAGTCGGATTTGGTAGGTGAAAACAAAAAGACTGGTAGGGTGAAAAGCTCTTTGTATTCCTTGAATGAAGTTCCTGTTCAGAGTCTTCAAGTGTTGGATTTATCTCACAATGCATTTTCTGGTGAAATCACTTCTGCTATTTCGGGTTTAAGCAGCTTGCAGGTTTTGAATTTATCATATAACTCTCTGACAGGCTATGTTCCGTCATCAATTGGTGGTTTAAAAACATGTTCTAGTCTTGATTTGAGTAATAATAAGCTAAATGGAAGCATACCTCTGGAAATTGGTGGAGCTGTTTCCTTGAAAGAGCTGATTTTGGAAAACAACTTCCTTATTGGGAAAATTCCAATCTCAATCGGGAACTGCTCTTCATTAACAACATTGATTCTGTCAAAGAACAAGCTGAGTGGGTCGATACCTGCAGCAGTTGCAAAACTCACCAACCTGAAAACTGTGGACGTATCATTCAACAACCTTACTGGAAACCTTCCCAAGCAATTGGGCAACCTTCCCAATCTCCTGACCTTCAATTTATCTCACAACAACCTTGAGGGTGAACTACCTGCTGGTGGTTTCTTCAACACCATTTCGCCTTCCTCTGTATCGGGCAATCCGTTTATCTGTGGCTCTGTTGTGAACAAAAAGTGCCCTGTTAAACTCCCGAAGCCTATTGTTCTGAATCCCAACTTTTCTTCTCCTGACCTTGACCCTAGTTCGCCTACTCCAACTTTAGGTCGCAAAAGAAATATCCTCAGCATTTCAGCACTCATTGCCATCGGTGCAGCTGCTTTCATTGTAATTGGTGTCATTGGAATAACTGTTCTCAACCTCCGTGTTCGGTCCACCGCATCTCGATCTCCAGCTGCCCTTGCTTTTTCTGCAGGGGATGAGTTCAGCCGTTCGCCGACAACAGATGCAAACTCCGGCAAGCTTGTTATGTTTTCAGGTGAACCCGATTTCAGCTCTGGAGCGCACGCTTTGCTTAACAAGGATTGCGAGCTTGGGCGTGGAGGTTTCGGGGCTGTGTACCAAACAGTTCTTGGAGACGGGCGTTCAGTTGCTATCAAGAAACTCACTGTGTCAAGCCTTGTCAAGTCTCAAGAAGATTTCGAGAGGGAGGTGAAGAAATTAGGAAAAGTCAGACACCAAAATCTCGTCGAACTCGAAGGCTATTATTGGACTTCATCGCTGCAACTCCTCATATACGAGTTTGTCTCACGTGGTAGCCTTTACAAGCATCTCCACGAAGGATCAGGCGAAAACTTCCTTTCGTGGAATGAGAGGTTCAATGTCATTCTTGGAACCGCAAAGGCCTTATCTCACTTGCACCACTCCAACATCATTCACTACAACATTAAGTCAACCAACATCCTTATCGATAGCTACGGTGAACCTAAAGTAGGGGATTACGGCCTAGCAAGGTTGCTACCAATGCTCGATCGCTACGTCTTGAGTAGCAAAATTCAAAGCGCACTCGGCTATATGGCACCAGAATTCGCCTGCAAAACAGTGAAAATCACCGAGAAATGCGATGTTTATGGATTCGGAGTTTTGGTTTTGGAGATCGTGACAGGTAAGAGGCCAGTAGAGTACATGGAGGATGATGTGGTTGTACTTTGTGACATGGTTAGAGGAGCATTGGACGAAGGAAGGGTAGAGGAATGCATTGATGAGAGACTTCTAGGGAAGTTTCCAGTAGAGGAAGTGATTCCTGTGATTAAGCTTGGTTTGGTATGTACTTCACAAGTACCATCTAATAGGCCAGAAATGGGAGAGGTAGTTACCATATTGGAACTTATAAGATGCCCCTCAGGCTCAGATGGACAAGAAGAGTTATTGGGATGA 2928 0.4283 MEVSSKMRVFFVCLFLLFLVTVTAVNPSLNDDVLGLIVFKADIQDPKGKLASWNEDDESACGGSWVGVKCNPRSNRVVEVNLNGFSLSGRIGRGLQRLQFLRRLYLANNNLTGSITPNIATIDNLRVLDLSNNNLSGVVPDDFFRQCGSMRAVSLAGNMFSGNVPSSIGSCSAIASIDLSVNQFSGSVPKEIWTLSGLRSLDLSDNLLEGEVPEGVEALKNLRSINLARNSFSGKIPDGFGSCLLLRSIDFSDNSFSGNIPNGLKELVLCGYFSLGGNAFSGDVPEWIGDMKGLQTLDLSRNRFSGLVPNSSGNLWSLKTLNLSGNGFTGNLPESMANCTNLLALDVSQNSLSGDLPSWIFKSDLVGENKKTGRVKSSLYSLNEVPVQSLQVLDLSHNAFSGEITSAISGLSSLQVLNLSYNSLTGYVPSSIGGLKTCSSLDLSNNKLNGSIPLEIGGAVSLKELILENNFLIGKIPISIGNCSSLTTLILSKNKLSGSIPAAVAKLTNLKTVDVSFNNLTGNLPKQLGNLPNLLTFNLSHNNLEGELPAGGFFNTISPSSVSGNPFICGSVVNKKCPVKLPKPIVLNPNFSSPDLDPSSPTPTLGRKRNILSISALIAIGAAAFIVIGVIGITVLNLRVRSTASRSPAALAFSAGDEFSRSPTTDANSGKLVMFSGEPDFSSGAHALLNKDCELGRGGFGAVYQTVLGDGRSVAIKKLTVSSLVKSQEDFEREVKKLGKVRHQNLVELEGYYWTSSLQLLIYEFVSRGSLYKHLHEGSGENFLSWNERFNVILGTAKALSHLHHSNIIHYNIKSTNILIDSYGEPKVGDYGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEIVTGKRPVEYMEDDVVVLCDMVRGALDEGRVEECIDERLLGKFPVEEVIPVIKLGLVCTSQVPSNRPEMGEVVTILELIRCPSGSDGQEELLG* 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g3008 975 CDD STKc_IRAK 695 961 - -
Tpr3g3008 975 SUPERFAMILY Protein kinase-like (PK-like) 692 963 IPR011009 -
Tpr3g3008 975 Gene3D Ribonuclease Inhibitor 309 581 IPR032675 -
Tpr3g3008 975 SUPERFAMILY RNI-like 80 362 - -
Tpr3g3008 975 Pfam Leucine rich repeat N-terminal domain 30 71 IPR013210 -
Tpr3g3008 975 Pfam Protein tyrosine and serine/threonine kinase 691 898 IPR001245 GO:0004672|GO:0006468
Tpr3g3008 975 ProSitePatterns Protein kinases ATP-binding region signature. 695 718 IPR017441 GO:0005524
Tpr3g3008 975 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE IRK-RELATED 7 963 - -
Tpr3g3008 975 SMART LRR_typ_2 531 555 IPR003591 -
Tpr3g3008 975 SMART LRR_typ_2 411 434 IPR003591 -
Tpr3g3008 975 SMART LRR_typ_2 387 410 IPR003591 -
Tpr3g3008 975 SMART LRR_typ_2 291 314 IPR003591 -
Tpr3g3008 975 SMART LRR_typ_2 507 530 IPR003591 -
Tpr3g3008 975 SMART LRR_typ_2 219 243 IPR003591 -
Tpr3g3008 975 SMART LRR_typ_2 195 218 IPR003591 -
Tpr3g3008 975 SMART LRR_typ_2 122 145 IPR003591 -
Tpr3g3008 975 SMART LRR_typ_2 98 121 IPR003591 -
Tpr3g3008 975 SMART LRR_typ_2 315 339 IPR003591 -
Tpr3g3008 975 Pfam Leucine Rich Repeat 221 243 IPR001611 GO:0005515
Tpr3g3008 975 Pfam Leucine Rich Repeat 124 143 IPR001611 GO:0005515
Tpr3g3008 975 PRINTS Leucine-rich repeat signature 125 138 - -
Tpr3g3008 975 PRINTS Leucine-rich repeat signature 411 424 - -
Tpr3g3008 975 ProSiteProfiles Leucine-rich repeat profile. 124 145 IPR001611 GO:0005515
Tpr3g3008 975 SMART LRR_sd22_2 507 533 - -
Tpr3g3008 975 SMART LRR_sd22_2 122 143 - -
Tpr3g3008 975 SMART LRR_sd22_2 195 218 - -
Tpr3g3008 975 SMART LRR_sd22_2 387 413 - -
Tpr3g3008 975 Gene3D Phosphorylase Kinase; domain 1 683 765 - -
Tpr3g3008 975 ProSiteProfiles Protein kinase domain profile. 689 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr3g3008 975 Gene3D Ribonuclease Inhibitor 30 308 IPR032675 -
Tpr3g3008 975 Gene3D Transferase(Phosphotransferase) domain 1 766 969 - -
Tpr3g3008 975 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 7 963 - -
Tpr3g3008 975 SUPERFAMILY L domain-like 274 578 - -
Tpr3g3008 975 Pfam Leucine rich repeat 274 327 IPR001611 GO:0005515
Tpr3g3008 975 Pfam Leucine rich repeat 461 520 IPR001611 GO:0005515
Tpr3g3008 975 Pfam Leucine rich repeat 389 448 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g3008 Tpr-Chr3 32501060 32505700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g3008 9 970 Receptor kinase-like Gene Family AT3G56370 67.495 0.0 1252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Tpr3g3008 PK_Tyr_Ser-Thr 5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g3008 - - mtr:MTR_3g093930 1672.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g3008 3 32501060 32505700 Tpr3g3008 3 32501060 32505700 ECH