Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2984 ATGGGGAGAAGACCTGCAAGATGTTATCGTCAGATCAAGAACAAGCCATACCCAAAATCACGGTTTTGCCGTGGTGTTCCTGATCCTAAGATCAGGATTTATGATGTGGGTATGAAGAAGAAAGGTGTTGATGAGTTTCCTTTCTGTGTCCATCTTGTTAGTTGGGAGAAGGAGAATGTTTCCAGTGAAGCATTGGAAGCTGCTCGTATCGCATGTAACAAGTACATGTCGAAATTTGCTGGAAAGGATGCTTTCCACTTGAGGGTTAGAGTTCATCCTTTCCATGTTCTTAGGATTAACAAGATGCTTTCGTGTGCTGGAGCTGATAGGCTTCAGACTGGTATGAGAGGAGCTTTCGGAAAGCCACTTGGTACTTGTGCTAGGGTTGCTATTGGTCAGGTTCTTCTTTCTGTCCGTTGTAAGGACACCAATAGCCATCATGCACAGGAGGCTCTCCGTCGTGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAGTGGGGTTTCACCAAGTTTAACCGTGTTGATTACCTCAAGTACAAGTCTGAGAACAGGATTTTGCCTGATGGTGTGAATGCCAAGCTTCTTGGGTGCCATGGACCATTGGCTAACCGTCAACCTGGAAGAGCTTTCATTGATGCTAGTACTCCTACTGCTTAG 672 0.4524 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPLGTCARVAIGQVLLSVRCKDTNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRVDYLKYKSENRILPDGVNAKLLGCHGPLANRQPGRAFIDASTPTA* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2984 223 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Tpr3g2984 223 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Tpr3g2984 223 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Tpr3g2984 223 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Tpr3g2984 223 PANTHER 60S RIBOSOMAL PROTEIN L10 1 219 IPR001197 GO:0003735|GO:0005840|GO:0006412
Tpr3g2984 223 Gene3D Ribosomal protein L10e/L16 1 217 IPR036920 GO:0003735|GO:0005840|GO:0006412
Tpr3g2984 223 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Tpr3g2984 223 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 219 - -
Tpr3g2984 223 TIGRFAM uL16_euk_arch: ribosomal protein uL16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2984 Tpr-Chr3 32273094 32274726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2984 1 220 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 87.727 4.71e-146 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2984 K02866 - pvy:116105818 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr4g2591 4 28484260 28486774 Tpr3g2984 3 32273094 32274726 PCT