Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2983 ATGATTCCTAATCCTCGAACTCGAACTTGTTCTCGGTTTCGTGCTAATTCGGAGGAAGAGGGCAGTTCTTTGAGGGATAGGGTTGAGGAATTGAGCTGTAATGAGGTGATTGGTGGCGGTGGTGGTGGTGGTCGTCGTGGTATGATGTTTTCGGAGGAGGATCGTCGTGCTATTGATGAGGAGAGAGTTCCTCTTGTGTCTTTGGCTGATGTTGTCGGTGGTGGTGATAGGGATAGTTCTTCTAACCATCCGAGGATTGATTTTCAGTATATTGCTAAGCTTGTTGAACAGATTCTTCCTTTTTCTCTTTTGTTGTTGATTGTTTTGATCCGACAACATTTCCAAGGTTTCTTTGTGACAATCAGTTTATCAGCTGTGATGTTCAAGTCGAATGAACTTGTTAAGAAACAGACTGCTCTAAAGGGAGATCAGAAAATCTTTATTCTTCTTGGTGTCTCTTTTTCCTTCATGCTGTATGTGATATGCATTTACTGGTGGTATCAAAATGATGATGTTCTATACCCTCTGGCCATGTTTCCGCCAGAATCAACACCACCTTTCTGGCATGCAATATTCATCATTTTGGTTAATGATATATTGGTACGGCAAGCAGCAATGGCTTTTAAGTGTTTGTTGCTGGTTTACTACAAAAATGGCAGATGCCATAATTTCCGTCAACAGGCTCAAATGTTAACTCTAGTTGAGTACACACTTCTGCTCTATCGTACTTTCTTGCCAGCACCAGTTTGGTACCGATTTTTCTTTAACAAGGACTTTGGAAGTCTCTTCTCATCACTGATCACAGGATTGTATCTAACGTTCAAGCTAACATCTTCAGTTGAGAAGATCCAGTGCTTAATTTCTGCTTTAAGAGCGTTGTCAAAAAAGGAAGTTCATTATGGGGTTTATGCCACAACGGAACAGGTAAATGCTGCTGGTGATCTGTGCGCTATATGCCAAGAGAAGATGCATGCTCCTATCCTGTTGTGCTGTAATCATATGTTCTGCGAGGAGTGTTTATCCGAATGGTTTGAGAGAGAATGGACTTGCCCGTTATGCAGGACATTGGTAAAACCTTCTGATCTGCGGACCTTCGGAGATGGATCAACAAGTTTGTTTTATCAGTTGTTTTGA 1134 0.4162 MIPNPRTRTCSRFRANSEEEGSSLRDRVEELSCNEVIGGGGGGGRRGMMFSEEDRRAIDEERVPLVSLADVVGGGDRDSSSNHPRIDFQYIAKLVEQILPFSLLLLIVLIRQHFQGFFVTISLSAVMFKSNELVKKQTALKGDQKIFILLGVSFSFMLYVICIYWWYQNDDVLYPLAMFPPESTPPFWHAIFIILVNDILVRQAAMAFKCLLLVYYKNGRCHNFRQQAQMLTLVEYTLLLYRTFLPAPVWYRFFFNKDFGSLFSSLITGLYLTFKLTSSVEKIQCLISALRALSKKEVHYGVYATTEQVNAAGDLCAICQEKMHAPILLCCNHMFCEECLSEWFEREWTCPLCRTLVKPSDLRTFGDGSTSLFYQLF* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2983 377 CDD RING-HC_RNFT1_like 315 354 - -
Tpr3g2983 377 SUPERFAMILY RING/U-box 307 360 - -
Tpr3g2983 377 SMART ring_2 316 353 IPR001841 -
Tpr3g2983 377 ProSitePatterns Zinc finger RING-type signature. 331 340 IPR017907 -
Tpr3g2983 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 364 IPR013083 -
Tpr3g2983 377 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 34 377 - -
Tpr3g2983 377 ProSiteProfiles Zinc finger RING-type profile. 316 354 IPR001841 -
Tpr3g2983 377 Pfam Zinc finger, C3HC4 type (RING finger) 314 357 - -
Tpr3g2983 377 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 34 377 IPR044235 GO:0061630|GO:1904294
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2983 Tpr-Chr3 32221866 32228445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2983 12 377 C3H Transcription Factor Family AT5G01960 60.656 1.04e-168 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2983 - K22379 gmx:100784614 531.176