Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2948 ATGAGCTTGCAGACACGAAGAGATAGGAGGGAAGGGGGGTCGAGGTTCCCACCACAACGTGCTCCTCGTCAAGAATGGGTTCCGAAAGGAACTGGAGCATCCACCACCACCTCTACCACTGCTCCCACAACCACTGCCACCGCCACCACAGCTGTTGTCGACCCTACAAGTTTGCACTCTCATCAGAAGAACACTAATGGTGATGGTGGTTCATCCAATCAAGGATCTGTTGTTTCTCCTCCGTTGGCTAGGCATAGAAGTAATCATCATGTTACTCATCGTGTGGAAAGGGAACATGTCGCTCATCGTGTTGAAAGGGAACATGTTGCTCATAGTGTTGATAGGGAACATGTTGCTCATCAAGTGGAAAGGGAAAATGTTGCTCATCGGGTGGAAAGGGAAAATATTGCTCATCGGGTGGAAAGGCAACATGTTGCTCATCGGGTGGAAAGGGATAAAGGGAGGAGTGGTAATACGGCTGGGAGGGAATACGGATCGAGGGACTCTAGTTTGCCTCAATTGGTGCAAGAGATTCAGGAGAAGCTCACAAGAGGTACAGTGGAGTGCATGATTTGCTATGATATGGTTCGTAGGTCTGCACCTATTTGGTCTTGCTCCAGCTGCTACTCTATCTTTCACCTGAATTGTATCAAGAAGTGGGCTCGTGCTCCCACCTCGGTTGATTTATCGGCAGAGAAGAATCTAGGGTTTAATTGGCGGTGTCCTGGTTGTCAGTTCGTGCAGCATACATCTTCAAGGGATATTAAGTATGTTTGCTTTTGTGGGAAGAGGACAGACCCTCCGCATGATTTGTATCTGACACCTCATTCGTGTGGTGAACCGTGTGGGAAGCCTCTTGAGAAGGAGGTGTTGTCTACTGAAGGGAGAAAGGACCAGCTTTGCCCTCATGCTTGTGTCTTGCAATGCCATCCTGGTCCATGTCCCCCGTGTAAAGCATTTGCCCCTCCTCGTTTGTGTCCTTGTGGAAAGAAAAGAATCGCCACCCGTTGCTCTGATCGGCAGTCTGATCTTACCTGCGGTCAGCGCTGTGATAAGCTTCTTAATTGTGGACGACATCGCTGTGAAAATGCTTGCCATGTGGGTCCTTGTGATCCTTGTCAGGTGCTAATCAATGCCTCTTGCTTTTGTAGTAAAATGACGCAGGTTATTTTTTGTGGAGAGATGGCTATGAAAGGTGAATTTAAAGTAGAAGATGGAGTTTTTTCTTGTGGTTCTAATTGTGGAACGGAACTTAGTTGCGGTAATCATATATGCCGTGATGTTTGTCATCCAGGCGGCTGTGGTGAATGTGAATTTTTACCAAGCCGGGTTAAGACATGCTGTTGTGGAAAAACAAAGTTGGAGGACGAACGGAAGAGTTGTGTGGATCCGATACCTACATGCTCACAAGTATGTGGCAAGCTCCTTCCTTGCGGGATACATGCTTGTAAGGAGTCATGCCATGTTGGGGAATGTCCACCGTGTAAGGTCCTAATTTCACAGAAATGCCGTTGTGGCTCAACTTCGCGAACTGTTGAATGCTATAAAACAATAACGGAGAATCAGAAATTTACTTGTGAAAAGCCATGTGGGGCAAAGAAGAATTGTGGAAGGCACCGATGTAGTGAAAAATGTTGTCCATTGTCTGGTCCAAATAAGGACTTGACTATTGCAGATTGGGATCCTCACTTTTGTTCCATGCTTTGTGGAAAGAAGCTGAGATGTGGCCAGCATGTATGTGAAACGTTGTGTCACAGTGGTCATTGCCCACCGTGTCTTGAAACAATCTTCACCGATTTAACATGTGCTTGTGGTAGGACTTCAATTCCTCCTCCCCTACCTTGTGGTACAATGCCTCCCTTATGTCAACTTCCATGTTCAGTTCCTCAGCCATGTGGTCATTTGGGCTCTCATAGTTGCCATTTTGGAGATTGCCCTCCTTGTTCGGTACCTGTGTCGAAAGAATGTGTCGGTGGCCATGTCATTCTTAGGAATATACCTTGTGGCTCAAATAATATTAGATGCAATAATCCCTGTGGAAGGACTAGACAATGCGGTTTACATGCATGCGGAAGAACATGCCACTCACCACCTTGTGATACTCTACCTGATTTTGTGAAAGGATACCGAGCGCCATGTGGGCAGACATGTGGTGCTCCAAGGAGTGGCTGCCGGCACATGTGTATGGCTCAATGTCACCCTACCATATCTTGCCCTGATGTAAGATGCGAGTTCCCCGTTACAATTACTTGCTCTTGTGGCCGCATATCAGCTAATGTTCCTTGTGATGTGGGTGGTAGCAATAGTAACTATAATGCTGATGCAATTTATGAAGCTTCCATTATTCAAAAATTGCCCGCGCCACTTCAACCGGTTGATGCTAATGGCCAAAAAGTTCCCCTTGGGCAAAGAAAGCTGATGTGTGATGAGGAATGTGCTAAGTTGGAACGTAAAAGGGTTCTTGCCGATGCCTTTGACATCACTCCAAGTCTTGATGCTCTCCACTTCGGTGAGAATTCTTCTTTTGAATTGCTTTCTGACACATTTAGACGTGATCCGAAATGGGTTTTGGCTGTTGAAGAGAGATGCAAAGTATTAGTACTTGGGAAAAGCAAAGGAACTACACATGGTTTAAAAATCCATGTCTTTTGCCCTATGATAAAGGATAAAAGAGATGCCGTGAGATTGATTGCTGAAAGATGGAAGCTTGCGGTGAATGCTGCTGGTTGGGAACCAAAGCGATTTGTCGTAATTTCTGTTACTCAAAAATCTAAGGCCCCAGCTCGTGTGCTCGGTGTTAAGGGTACCACAACTTTAAACGCGCCACTTCCTACTGCATTTGATCCCTTGGTTGATATGGACCCAAGGCTTGTTGTCTCGTTTCCAGACTTGCCAAGGGACGCTGATATTAGTGCCTTGGTGTTGAGATTTGGCGGCGAATGTGAGCTTGTTTGGTTGAACGACAAAAATGCTTTGGCTGTTTTTCATGATCCTGCCCGAGCTGCAACTGCGATGAGGAGATTGGATCATGGAACAGTTTATCAGGGTGCTGTTTCTTTTGTCCAGAGTGCCGGAGCATCAGCGGTGTCTTCGGTTACCAATGCATGGGGAGGTACGAAAGATGGAGGAGGACTGTCAACACTGAGAAGTAATCCATGGAAAAAGGCAGTGGTTCTCGACCCGGGTTGGAAAGAAGATTCATGGGGTGATGAACAATGGGCTGCCGGTGGTTCTGCAAATATTCAACCATCAGTTTTGAAGAAAGAAGCGCCGATACCCGCTTCATTGAATCCTTGGAATGTTTTAAACCAGGAATCGAGTTCAAGTTCATCACCGACAACCGTCATGAGAAGTTTAACTTCTGGAAAACAAGCCGAAAGTGGAGATGTCTCAACTAGGTTGGAGTCTTCTTCACGTAGCGCAAATGTAGGAAACTTGGATGCAAGAGATGATTCTGAAGTTGTAGATGATTGGGAGAAGGCTTTTGAATGA 3492 0.4622 MSLQTRRDRREGGSRFPPQRAPRQEWVPKGTGASTTTSTTAPTTTATATTAVVDPTSLHSHQKNTNGDGGSSNQGSVVSPPLARHRSNHHVTHRVEREHVAHRVEREHVAHSVDREHVAHQVERENVAHRVERENIAHRVERQHVAHRVERDKGRSGNTAGREYGSRDSSLPQLVQEIQEKLTRGTVECMICYDMVRRSAPIWSCSSCYSIFHLNCIKKWARAPTSVDLSAEKNLGFNWRCPGCQFVQHTSSRDIKYVCFCGKRTDPPHDLYLTPHSCGEPCGKPLEKEVLSTEGRKDQLCPHACVLQCHPGPCPPCKAFAPPRLCPCGKKRIATRCSDRQSDLTCGQRCDKLLNCGRHRCENACHVGPCDPCQVLINASCFCSKMTQVIFCGEMAMKGEFKVEDGVFSCGSNCGTELSCGNHICRDVCHPGGCGECEFLPSRVKTCCCGKTKLEDERKSCVDPIPTCSQVCGKLLPCGIHACKESCHVGECPPCKVLISQKCRCGSTSRTVECYKTITENQKFTCEKPCGAKKNCGRHRCSEKCCPLSGPNKDLTIADWDPHFCSMLCGKKLRCGQHVCETLCHSGHCPPCLETIFTDLTCACGRTSIPPPLPCGTMPPLCQLPCSVPQPCGHLGSHSCHFGDCPPCSVPVSKECVGGHVILRNIPCGSNNIRCNNPCGRTRQCGLHACGRTCHSPPCDTLPDFVKGYRAPCGQTCGAPRSGCRHMCMAQCHPTISCPDVRCEFPVTITCSCGRISANVPCDVGGSNSNYNADAIYEASIIQKLPAPLQPVDANGQKVPLGQRKLMCDEECAKLERKRVLADAFDITPSLDALHFGENSSFELLSDTFRRDPKWVLAVEERCKVLVLGKSKGTTHGLKIHVFCPMIKDKRDAVRLIAERWKLAVNAAGWEPKRFVVISVTQKSKAPARVLGVKGTTTLNAPLPTAFDPLVDMDPRLVVSFPDLPRDADISALVLRFGGECELVWLNDKNALAVFHDPARAATAMRRLDHGTVYQGAVSFVQSAGASAVSSVTNAWGGTKDGGGLSTLRSNPWKKAVVLDPGWKEDSWGDEQWAAGGSANIQPSVLKKEAPIPASLNPWNVLNQESSSSSSPTTVMRSLTSGKQAESGDVSTRLESSSRSANVGNLDARDDSEVVDDWEKAFE* 1164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2948 1163 SUPERFAMILY RING/U-box 179 249 - -
Tpr3g2948 1163 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 157 1159 - -
Tpr3g2948 1163 CDD NF-X1-zinc-finger 468 516 - -
Tpr3g2948 1163 MobiDBLite consensus disorder prediction 1104 1163 - -
Tpr3g2948 1163 MobiDBLite consensus disorder prediction 1 16 - -
Tpr3g2948 1163 MobiDBLite consensus disorder prediction 141 158 - -
Tpr3g2948 1163 CDD NF-X1-zinc-finger 622 670 - -
Tpr3g2948 1163 MobiDBLite consensus disorder prediction 1 92 - -
Tpr3g2948 1163 CDD NF-X1-zinc-finger 410 455 - -
Tpr3g2948 1163 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 157 1159 IPR034078 GO:0003700
Tpr3g2948 1163 CDD NF-X1-zinc-finger 278 339 - -
Tpr3g2948 1163 ProSiteProfiles Zinc finger RING-type profile. 189 245 IPR001841 -
Tpr3g2948 1163 CDD NF-X1-zinc-finger 565 617 - -
Tpr3g2948 1163 CDD NF-X1-zinc-finger 346 394 - -
Tpr3g2948 1163 MobiDBLite consensus disorder prediction 29 81 - -
Tpr3g2948 1163 CDD RING-CH-C4HC3_NFX1 188 245 - -
Tpr3g2948 1163 Pfam NF-X1 type zinc finger 632 649 IPR000967 GO:0005634|GO:0008270
Tpr3g2948 1163 Pfam NF-X1 type zinc finger 685 700 IPR000967 GO:0005634|GO:0008270
Tpr3g2948 1163 Pfam NF-X1 type zinc finger 575 592 IPR000967 GO:0005634|GO:0008270
Tpr3g2948 1163 Pfam NF-X1 type zinc finger 478 496 IPR000967 GO:0005634|GO:0008270
Tpr3g2948 1163 Pfam NF-X1 type zinc finger 420 437 IPR000967 GO:0005634|GO:0008270
Tpr3g2948 1163 Pfam NF-X1 type zinc finger 536 547 IPR000967 GO:0005634|GO:0008270
Tpr3g2948 1163 Pfam NF-X1 type zinc finger 303 318 IPR000967 GO:0005634|GO:0008270
Tpr3g2948 1163 Pfam NF-X1 type zinc finger 356 374 IPR000967 GO:0005634|GO:0008270
Tpr3g2948 1163 MobiDBLite consensus disorder prediction 1149 1163 - -
Tpr3g2948 1163 ProSiteProfiles Zinc finger PHD-type profile. 186 247 IPR019787 -
Tpr3g2948 1163 MobiDBLite consensus disorder prediction 141 169 - -
Tpr3g2948 1163 MobiDBLite consensus disorder prediction 1104 1145 - -
Tpr3g2948 1163 SMART znfxneu3 536 567 IPR000967 GO:0005634|GO:0008270
Tpr3g2948 1163 SMART znfxneu3 478 497 IPR000967 GO:0005634|GO:0008270
Tpr3g2948 1163 SMART znfxneu3 420 439 IPR000967 GO:0005634|GO:0008270
Tpr3g2948 1163 SMART znfxneu3 356 375 IPR000967 GO:0005634|GO:0008270
Tpr3g2948 1163 SMART znfxneu3 724 745 IPR000967 GO:0005634|GO:0008270
Tpr3g2948 1163 SMART znfxneu3 685 715 IPR000967 GO:0005634|GO:0008270
Tpr3g2948 1163 SMART znfxneu3 575 594 IPR000967 GO:0005634|GO:0008270
Tpr3g2948 1163 SMART znfxneu3 301 319 IPR000967 GO:0005634|GO:0008270
Tpr3g2948 1163 SMART znfxneu3 632 650 IPR000967 GO:0005634|GO:0008270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Tpr3g2948 zf-NF-X1 0.19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2948 K12236 - gmx:100819219 1669.06