Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2894 ATGGAAGAAATCAGAGGAGCAGCAGTACCAAAATCTCTGATGGAGAATCTGTTAGGTCTTCTGAGGGTTCGTATCAAGCGTGGTGTCAACCTTGCTGTTCGTGATGTTCGTAGCAGCGATCCTTATCTTGTCCTCAAGATGTACAATCAGAAACTTAAGACTCGTGTGATTAAAAAGGATGTTAATCCTGAGTGGAATGAAGATCTTACTCTTTCTGTTATAGATCCTAATCACATAGTTTCATTGACTGTATATGATCATGACACTTTTAGCAAAGATGACAAAATGGGAGATGCAGAGTTTGAGATCTCAACCTTTATAGAAACCCTGAGGATGAATGTTACCGGCCTAGCAAACGGCACCGTAATCAAACGAATACATCCAAGCAAGCACAACTGCCTTGCTGAAGAGAGCTGTATCTATTATTCCAACGGCAAAATTAGCCAAGATATGATCCTTAGATTGCAAAATGTGGAATGTGGTGAAGTGGAAATCAGTCTGCACTGGATTGATCTTCCTGGTTCTAGGGGTTTATGA 537 0.4078 MEEIRGAAVPKSLMENLLGLLRVRIKRGVNLAVRDVRSSDPYLVLKMYNQKLKTRVIKKDVNPEWNEDLTLSVIDPNHIVSLTVYDHDTFSKDDKMGDAEFEISTFIETLRMNVTGLANGTVIKRIHPSKHNCLAEESCIYYSNGKISQDMILRLQNVECGEVEISLHWIDLPGSRGL* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2894 178 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 15 113 IPR035892 -
Tpr3g2894 178 SMART C2_3c 20 115 IPR000008 -
Tpr3g2894 178 CDD C2_ArfGAP 18 161 - -
Tpr3g2894 178 ProSiteProfiles C2 domain profile. 1 116 IPR000008 -
Tpr3g2894 178 Gene3D C2 domain 15 176 IPR035892 -
Tpr3g2894 178 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 9 176 - -
Tpr3g2894 178 Pfam C2 domain 19 108 IPR000008 -
Tpr3g2894 178 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 9 176 IPR044562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2894 Tpr-Chr3 30573390 30576531 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2894 51 178 C2H2 Transcription Factor Family AT1G70790 59.231 1.50e-50 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2894 - - gmx:100810504 303.138