Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2881 ATGGTCATCCAAAACAAAGCATCACTCACTCCATTTCCACCTCCCGCCAAACTCCTGAAACCAAAAACCTCATTTGGCGCCTTAAACGCTTCCCTACTTCTCCAACTTCAGATCCATTTTCCTCACACCCACTCCAAATCAATCCTTCAATTTTATTCAACCGTTTCGGAAAAACAAACCATTATGAAGGTCCGGTCAGTGAAAATGAGGGAGGCTCACACTCAAAAGGGCGGCCGTGCTTCCTTCTGCTCAGTCCTATGGGACCAGCAAGCCCAACATCTGGTAACTTCCTCTTCTTCCGATGTGTCTGTCTCGATTCATAACCCTCTTCTTCCCTCCGCCGCCCCTAAAATCCTCCGTCACCACCGTGATGGTGTTACTGCTTTGGCTCTTAGCCCTAATTCCACTTGTCTTGCTTCTGGATCTGTCGATCACTCCGTTAAACTCTACAAATTTCCAGGTGGAGAGTTTGAGACAAATATAACGAGGTTCACACTTCCGATACGTTCCCTAGCATTTAACAAGAAAGGAAGCATGTTAGCAGCTGCAGGTGATGACGAGGGCATCAAGCTCATAAACACAGTTGATGGCTCTATTGCGAGGGTTCTGAAAGGGCACAAAGGACAGGTCACCGGCTTAGCTTTTGACCCTAATGGTGAATACTTAGCATCTCTGGACTCAAATGGAACCGTTATCATATGGGAACTGCAGTCAGGGAAAAACCTTCACAACCTCAAAGGCATCGCTCCTGACACTGGGTTAGATGTTTCAACCATGAATGTTCTTTGTTGGAGTCCCGATGGTGAGACTTTAGCCATTCCCGGGTTGAGAAATGATGTCGTAATGTATGATAGGGACACGGCTGAGAAGTTGTTCTCTCTGAGAGGAGATCATAACCAGCCTATATGTTTTTTGTGTTGGTCACCGAATGGCAAGTACATGGCTACTTCGGGATTAGATAAACAGATTCTGATATGGGATGTTGATAGGAAGCAGGATATTGACAGACAGAAGTTTGATGAAATAGTGTGTTGCATGGCATGGAAGCCAATTGGGAATGCGTTGACTGTTATTGATGTTATGGGAAAATACGGCATATGGGACAATGTTATTCCTTCGTCTATGAAGTCCCCAACGGAGGATATCCCTATGCAGGGCAAGAACAATAAAGGGCTTCTTTTGTATGACGAGGAAGATCAGAACAATGGTTTTAGTGAGAGCTTGAGTGATCTTGGTGAAAATAGTAACGGGGAGTTTGAGCCACCAACTAGCAGGAAAAGATTGCGCAAGCATTCCTTGAGCGAGGAAAATTTTGACGAGGATGGAGACGATGGAATTGATCTATATCCAAAAATTGAGTCTCACAAGAAAAGGAACCGGTCAGCCAAGGAGAATTTGGATAATGGCAATGTGGGATTTAGAAGCACAATTTTACCCAAGACAAAAATGCAGGAGGCATTTCAACCAGGAGCCACGCCAGTGCAGCCTGGAAAAAGGCGCTTCTTATGCTACAATATGCTTGGAAGTATAACCACTGTCGATCACGATGGGTACTCTCATATTGAGATTGATTTTCATGATACTGGAAGTAGTCCTCGAGTTCCATCAATGACTGACCATTTTGGATTTACAATGGCTGCATTGAATGAGAATGGAAGTGTCTTTGCAAATCCTTGCAAGGGGGAGAAGAACATGAGCACACTCATGTATCGCCCATTTAGTAGCTGGGCTAGTAATAGTGAGTGGTCTATGCGCTTTGAAGGCGAAGAAGTAAAGGTTGTTGCACTTGGTGCTTCTTGGGTGGCTGCAGTAACTAGTTTTAATTACCTTCGGATCTTTACTGAGGGTGGTATGCAGAGACATGTAATTTCGCTAGACGGGCTAGTGGTGACTGCATCGGGTTTCAAGGATAAGCTTGCAGTTGTCACTCATGCTACTGATTGCCTTTCCTCAAACGATCAGGTGTTAGAGTTTAAGTTATTTAATATAACACATGGGACTCAACCCCTTCGCGGTCGCTTGCCAATAACTCCTGGTTCCTCTCTAAGTTGGTTTGGGTTTAGTGAAGAGGGCCAATTGTGTTCTTATGATTCCAAGGGTGTGCTAAGATTATATACAAGCCAATTTGGTGGTAGCTGGTTTCCAGTCTTCAGTGCTTTTAAAGAGAAGACAGATGAAAACTATTGGATGGTGGGTTTGCAAACAAACAAGTTAGTTTGTGTAGTATGCAAAAAGCCTGAATTCTTCCCACAGGTGGTGCCTAAACCAATTCTTACTTTAATGAATCTTGCGTTTCCACTCGCTACTTCTGATTTGGGATCTGAAGCCCTTGAAAACGAGTTTATGATGAACAGCATGCATCTCTTTGAGATTCAGAAAAAAATGGAAGAAATGGATAATGCTGGTTTGGATGCCAGCTTACTTGATGATGATGCTTTCAATTTGGAAGCTGCACAAGATAGATGCATACTAAGACTTATAGCATCCTGCTGCAATAGTGATAAACTTGTGAGAGCTACTGAACTTGTGAAGCTTTTGTCACTGGAGAAATCAATGAAAGGTGCAATAAAACTTGTTACTGCTCTGAAGCTTCCAAATTTGGCCGAAAAATTCAATGGCATATTGGAGGAAAGGCTATATAATGAAGTTAAAAAGACTAAAGAAACCAACCTCAAGGAAAACAGTTTTGCACCCGTTACATCGGATACTCTACCTAGCGGTAGCAAGGCCGAAACATCAAAAGCATCTATCATTTCATCATCACCAAATTTATCTGCACCGTTGTTCACAAAGAAAAATAAAACACAAGAAGCAGCTAAAGATGGAACGAATAAAACTGCAGAGGTGGATGGAAGTATGAAAGCAAAGCAGACAGGAGGGGATGAAACAAGTGACAAGAAGGGTAAGGAGGAAGTGCAAGCTCCTCCTCATCCACATGGTTCGTCGATAAAGTTGACAAATAAGCATGGCACTAACAAATCAGAACCTAGTTTGGTGACACCAACAAGACCTTCCAATCCATTTTTGAAGTCTGCAATAAAATGA 3045 0.4302 MVIQNKASLTPFPPPAKLLKPKTSFGALNASLLLQLQIHFPHTHSKSILQFYSTVSEKQTIMKVRSVKMREAHTQKGGRASFCSVLWDQQAQHLVTSSSSDVSVSIHNPLLPSAAPKILRHHRDGVTALALSPNSTCLASGSVDHSVKLYKFPGGEFETNITRFTLPIRSLAFNKKGSMLAAAGDDEGIKLINTVDGSIARVLKGHKGQVTGLAFDPNGEYLASLDSNGTVIIWELQSGKNLHNLKGIAPDTGLDVSTMNVLCWSPDGETLAIPGLRNDVVMYDRDTAEKLFSLRGDHNQPICFLCWSPNGKYMATSGLDKQILIWDVDRKQDIDRQKFDEIVCCMAWKPIGNALTVIDVMGKYGIWDNVIPSSMKSPTEDIPMQGKNNKGLLLYDEEDQNNGFSESLSDLGENSNGEFEPPTSRKRLRKHSLSEENFDEDGDDGIDLYPKIESHKKRNRSAKENLDNGNVGFRSTILPKTKMQEAFQPGATPVQPGKRRFLCYNMLGSITTVDHDGYSHIEIDFHDTGSSPRVPSMTDHFGFTMAALNENGSVFANPCKGEKNMSTLMYRPFSSWASNSEWSMRFEGEEVKVVALGASWVAAVTSFNYLRIFTEGGMQRHVISLDGLVVTASGFKDKLAVVTHATDCLSSNDQVLEFKLFNITHGTQPLRGRLPITPGSSLSWFGFSEEGQLCSYDSKGVLRLYTSQFGGSWFPVFSAFKEKTDENYWMVGLQTNKLVCVVCKKPEFFPQVVPKPILTLMNLAFPLATSDLGSEALENEFMMNSMHLFEIQKKMEEMDNAGLDASLLDDDAFNLEAAQDRCILRLIASCCNSDKLVRATELVKLLSLEKSMKGAIKLVTALKLPNLAEKFNGILEERLYNEVKKTKETNLKENSFAPVTSDTLPSGSKAETSKASIISSSPNLSAPLFTKKNKTQEAAKDGTNKTAEVDGSMKAKQTGGDETSDKKGKEEVQAPPHPHGSSIKLTNKHGTNKSEPSLVTPTRPSNPFLKSAIK* 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2881 1014 ProSitePatterns Trp-Asp (WD) repeats signature. 314 328 IPR019775 -
Tpr3g2881 1014 MobiDBLite consensus disorder prediction 959 974 - -
Tpr3g2881 1014 MobiDBLite consensus disorder prediction 984 1007 - -
Tpr3g2881 1014 MobiDBLite consensus disorder prediction 420 437 - -
Tpr3g2881 1014 Pfam WD domain, G-beta repeat 118 150 IPR001680 GO:0005515
Tpr3g2881 1014 Pfam WD domain, G-beta repeat 201 234 IPR001680 GO:0005515
Tpr3g2881 1014 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 119 151 - -
Tpr3g2881 1014 CDD WD40 122 371 - -
Tpr3g2881 1014 Gene3D - 255 383 IPR015943 GO:0005515
Tpr3g2881 1014 SMART WD40_4 68 108 IPR001680 GO:0005515
Tpr3g2881 1014 SMART WD40_4 196 235 IPR001680 GO:0005515
Tpr3g2881 1014 SMART WD40_4 287 327 IPR001680 GO:0005515
Tpr3g2881 1014 SMART WD40_4 112 151 IPR001680 GO:0005515
Tpr3g2881 1014 SMART WD40_4 154 193 IPR001680 GO:0005515
Tpr3g2881 1014 MobiDBLite consensus disorder prediction 406 442 - -
Tpr3g2881 1014 ProSiteProfiles Trp-Asp (WD) repeats profile. 119 160 IPR001680 GO:0005515
Tpr3g2881 1014 ProSitePatterns Trp-Asp (WD) repeats signature. 222 236 IPR019775 -
Tpr3g2881 1014 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 336 IPR001680 GO:0005515
Tpr3g2881 1014 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 203 240 - -
Tpr3g2881 1014 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 295 329 - -
Tpr3g2881 1014 MobiDBLite consensus disorder prediction 894 932 - -
Tpr3g2881 1014 Pfam Anaphase-promoting complex subunit 4 WD40 domain 262 349 IPR024977 -
Tpr3g2881 1014 Pfam Minichromosome loss protein, Mcl1, middle region 486 767 IPR022100 -
Tpr3g2881 1014 Gene3D - 40 254 IPR015943 GO:0005515
Tpr3g2881 1014 ProSiteProfiles Trp-Asp (WD) repeats profile. 203 244 IPR001680 GO:0005515
Tpr3g2881 1014 MobiDBLite consensus disorder prediction 894 1014 - -
Tpr3g2881 1014 SUPERFAMILY WD40 repeat-like 56 368 IPR036322 GO:0005515
Tpr3g2881 1014 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 62 971 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2881 120 330 U-box Gene Family AT2G33340 21.028 2.14e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2881 K11274 - gmx:100818807 1474.14