Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g2868 ATGAACAATCTCCTTGGAGAGGAAAGGGAGCAATATCCGAAAAAGCGGAAATCTTGTGATGAAGCCACTACAAACATGAGGACATCAAGAAGAAGATTATGCAACAACAAAAATGAAGAAGATGGACACAACTATAACAAATCAGTCTCAACAACACTAAAGCTTTACGATGATCCGTGGAAGATCAAAAAGACGCTAACCGACAGTGATCTAGGAATCTTGAGCAGACTCTTGTTAGCTGCAGACTTGGTGAAGAAACAAATTTTGCCTATGCTGGATCTTGACGACGCAAGAGCTGCAGAGACCGAGGAAGGATCCCCGGTCAATGTTTGGGACATGGAAACAAATTCCATGCACCAACTTGTTCTAAAGCGATGGTCTTCGTCCAAGAGTTACGTTCTTATTGGTAAGTGGAACCATGATTTTGTGAGGAGAAGAGATCTCAAGAAAGGAGATGAAATTGGATTTCAATGGGATCCTTTTAACCGTGCTTTCAATTTCTGTGTTCTTAAACGGGCTACACGTCTCAATAACGGATTCATTTCTTTGTGA 552 0.413 MNNLLGEEREQYPKKRKSCDEATTNMRTSRRRLCNNKNEEDGHNYNKSVSTTLKLYDDPWKIKKTLTDSDLGILSRLLLAADLVKKQILPMLDLDDARAAETEEGSPVNVWDMETNSMHQLVLKRWSSSKSYVLIGKWNHDFVRRRDLKKGDEIGFQWDPFNRAFNFCVLKRATRLNNGFISL* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g2868 183 SUPERFAMILY DNA-binding pseudobarrel domain 58 167 IPR015300 -
Tpr3g2868 183 MobiDBLite consensus disorder prediction 1 25 - -
Tpr3g2868 183 MobiDBLite consensus disorder prediction 8 25 - -
Tpr3g2868 183 CDD B3_DNA 60 171 IPR003340 GO:0003677
Tpr3g2868 183 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 9 172 - -
Tpr3g2868 183 Gene3D - 59 177 IPR015300 -
Tpr3g2868 183 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 9 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g2868 Tpr-Chr3 30177198 30178225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g2868 62 156 RAV Transcription Factor Family AT1G50680 35.294 7.32e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g2868 - - pvu:PHAVU_009G204600g 266.929